Browse Element(s) Details


Os.14366.1.S1_s_at

Description gb:AK073011.1
DB_XREF= gi:32983034
TID=Os.14366.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145I01, full insert sequence.
FL= gb:AK073011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3784011/11Phosphate-induced protein 1 conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14366.1.S1_s_at--381--9271Chr08:23836801..23836825 (25 bp)
TCCTGCCGGCGATGTGGGACCCCAA
LOC_Os08g37840
Os.14366.1.S1_s_at--163--791Chr08:23836790..23836814 (25 bp)
ATGTGGGACCCCAAGACCTCGCAGT
LOC_Os08g37840
Os.14366.1.S1_s_at--339--2771Chr08:23836778..23836802 (25 bp)
AAGACCTCGCAGTGCTCTACTCTCG
LOC_Os08g37840
Os.14366.1.S1_s_at--76--5031Chr08:23836770..23836794 (25 bp)
GCAGTGCTCTACTCTCGTGTAGTAG
LOC_Os08g37840
Os.14366.1.S1_s_at--848--4811Chr08:23836765..23836789 (25 bp)
GCTCTACTCTCGTGTAGTAGTACTA
LOC_Os08g37840
Os.14366.1.S1_s_at--285--6931Chr08:23836749..23836773 (25 bp)
GTAGTACTAGTACAAACCCTCTGAT
LOC_Os08g37840
Os.14366.1.S1_s_at--105--10071Chr08:23836742..23836766 (25 bp)
TAGTACAAACCCTCTGATGCGATCG
LOC_Os08g37840
Os.14366.1.S1_s_at--965--2191Chr08:23836738..23836762 (25 bp)
ACAAACCCTCTGATGCGATCGATCG
LOC_Os08g37840
Os.14366.1.S1_s_at--728--4051Chr08:23836723..23836747 (25 bp)
CGATCGATCGATGGACCAAAATGGC
LOC_Os08g37840
Os.14366.1.S1_s_at--748--3271Chr08:23836707..23836731 (25 bp)
CAAAATGGCTTGGGCTCGGTGTACG
LOC_Os08g37840
Os.14366.1.S1_s_at--69--3791Chr08:23836693..23836717 (25 bp)
CTCGGTGTACGGACGGCTGGGATTA
LOC_Os08g37840
Target Sequence 
TCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCG
ATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14366.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis