Browse Element(s) Details


Os.23397.1.S1_at

Description gb:AK100705.1
DB_XREF= gi:32985914
TID=Os.23397.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114P18, full insert sequence.
FL= gb:AK068155.1 gb:AK100705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3787410/112-nitropropane dioxygenase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23397.1.S1_at--1039--271Chr08:23858271..23858295 (25 bp)
ATAGGCCACACTATCATCCATGGTG
LOC_Os08g37874
Os.23397.1.S1_at--540--2031NONE
ACTATCATCCATGGTGTGCACAGGG
NONE
Os.23397.1.S1_at--431--5391Chr08:23862478..23862502 (25 bp)
GAAGCACAGCACGTCATCAGAGAAA
LOC_Os08g37874
Os.23397.1.S1_at--193--10791Chr08:23862508..23862532 (25 bp)
TTGTGAATTTCCTGTACTGTCCAAG
LOC_Os08g37874
Os.23397.1.S1_at--211--9831Chr08:23862579..23862603 (25 bp)
TAAAAGAGTCCACCAAGCTGTCCAT
LOC_Os08g37874
Os.23397.1.S1_at--891--2671Chr08:23862593..23862617 (25 bp)
AAGCTGTCCATTTCCCCAAACAAGT
LOC_Os08g37874
Os.23397.1.S1_at--576--51Chr08:23862659..23862683 (25 bp)
ATTGATTGCTTCTACATCTGTTTGT
LOC_Os08g37874
Os.23397.1.S1_at--929--9551Chr08:23862724..23862748 (25 bp)
TCTTCTTTCGGCTTCAATGTTGTAC
LOC_Os08g37874
Os.23397.1.S1_at--466--6891Chr08:23862761..23862785 (25 bp)
GTATGTCCCCAAAATTGTACTAGTT
LOC_Os08g37874
Os.23397.1.S1_at--1032--1231Chr08:23862782..23862806 (25 bp)
AGTTGTGTTGCTTTATTACCAGGAC
LOC_Os08g37874
Os.23397.1.S1_at--411--8151Chr08:23862803..23862827 (25 bp)
GGACAAGCTGCCCAAACACTATGAG
LOC_Os08g37874
Target Sequence 
ATAGGCCACACTATCATCCATGGTGTGCACAGGGATATTNGTCGGTTCGCTGGTACTGTTCCTAATGCGACAACAACAGG
TGATATTGATAGCATGGTCATGTATGCTGGTCAGGGTGTTGGGCTAATCACAGAGATCATNCCAGCTAGTGNAGTTGTCA
AAAGGTTAGTTTNTGAAGCACAGCACGTCATCAGAGAAAAGCNTTTGTGAATTTCCTGTACTGTCCAAGGAGCAGTAAAT
ACTATCTGGTTTTTGTAAGCAAGGNCCAATGAAAATAAAAGAGTCCACCAAGCTGTCCATTTCCCCAAACAAGTCCNCGG
TGTTGTTACATNGTATATCTGCAGAATTACNCAGTATTGATTGCTTCTACATCTGTTTGTAAGTAACAACTATTGAAATA
TAGATTTNGCAAATGTATTCTCTTCTTTCGGCTTCAATGTTGTACTAGGAGTACAAAGTATGTCCCCAAAATTGTACTAG
TTGTGTTGCTTTATTACCAGGACAAGCTGCCCAAACACTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis