Browse Element(s) Details


Os.53834.1.S1_at

Description gb:AK100329.1
DB_XREF= gi:32985538
TID=Os.53834.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080H15, full insert sequence.
FL= gb:AK100329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1796011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53834.1.S1_at--413--571Chr03:9980741..9980765 (25 bp)
ATCCAGTTGCCCTTCTTCTAAGAAA
LOC_Os03g17960
Os.53834.1.S1_at--442--10111Chr03:9980855..9980879 (25 bp)
TATGGAATTTGACTGCCCTGCATCA
LOC_Os03g17960
Os.53834.1.S1_at--817--2811Chr03:9981438..9981462 (25 bp)
AAGATTTGCTCGTCTGCGTATGTTC
LOC_Os03g17960
Os.53834.1.S1_at--660--6451Chr03:9981484..9981508 (25 bp)
GATCACATTGCTAGTTTGCCTTTGG
LOC_Os03g17960
Os.53834.1.S1_at--647--4451Chr03:9981501..9981525 (25 bp)
GCCTTTGGTGTGGACTCGAGCAGAC
LOC_Os03g17960
Os.53834.1.S1_at--248--5051Chr03:9981520..9981544 (25 bp)
GCAGACATGTGTTTGCTCACGCGTG
LOC_Os03g17960
Os.53834.1.S1_at--510--7411Chr03:9981545..9981569 (25 bp)
GTGTTTTATTCTCACCAGTCCAAGA
LOC_Os03g17960
Os.53834.1.S1_at--174--4011Chr03:9981593..9981617 (25 bp)
CGTGCTCGGATGATCTTTGTGTTCT
LOC_Os03g17960
Os.53834.1.S1_at--961--3471Chr03:9981628..9981652 (25 bp)
CAGGTTCTGTGTGCTTGCTTAGCAT
LOC_Os03g17960
Os.53834.1.S1_at--1068--8491Chr03:9981686..9981710 (25 bp)
TGGCAATAACTTGTACCTTCGGTAT
LOC_Os03g17960
Os.53834.1.S1_at--743--1951Chr03:9981755..9981779 (25 bp)
ACTGTGAACTGTTGATGCCCGTGCA
LOC_Os03g17960
Target Sequence 
ATCCAGTTGCCCTTCTTCTAAGAAATCTTTCTCCAGTAAAGCCTTGTCATCCAAGCGGATGTCATCTGGTAATGCTTCTG
CTGGAGTCGGTGATCTTAACGAAGTGATTGCAGATATGGAATTTGACTGCCCTGCATCAGATGATCAGCTGGAACTGAAA
GAACATGGGGATTCTGAGATCAACTAGCTTCTGGAGAGGGACTTACTACAGCGGTACAACTGCAATGGGTGCTAATATAA
ATTTAGATGTAAGATTTGCTCGTCTGCGTATGTTCGGTAGTTTGAATTTCTGACTTGATCACATTGCTAGTTTGCCTTTG
GTGTGGACTCGAGCAGACATGTGTTTGCTCACGCGTGGTGTTTTATTCTCACCAGTCCAAGAACATGGTTTTCAGCAAAG
ATCATCGTGCTCGGATGATCTTTGTGTTCTTGACAGTTGACAGGTTCTGTGTGCTTGCTTAGCATGACAAATGAGGGTTA
TGGTATTCTTGTTTGATTTGGCAATAACTTGTACCTTCGGTATTTGAGGTCAATGTAATATGGATTTCTTTATGATTGCC
AGTGAACACTGTGAACTGTTGATGCCCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis