Browse Element(s) Details


Os.53449.1.A1_at

Description gb:AK072700.1
DB_XREF= gi:32982723
TID=Os.53449.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135G07, full insert sequence.
FL= gb:AK072700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1795011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53449.1.A1_at--446--9911Chr03:9976712..9976736 (25 bp)
TACTCTGGTGCCCAATCTAGCAAAA
LOC_Os03g17950
Os.53449.1.A1_at--848--1191Chr03:9976785..9976809 (25 bp)
AGTATGTTGCTTTGATTTCCGGCGT
LOC_Os03g17950
Os.53449.1.A1_at--560--6691Chr03:9976808..9976832 (25 bp)
GTTCCAGCAGTTATTCACCCAGGTG
LOC_Os03g17950
Os.53449.1.A1_at--86--1051Chr03:9976828..9976852 (25 bp)
AGGTGCTCTTATACTGGCTGTGGGC
LOC_Os03g17950
Os.53449.1.A1_at--294--7611Chr03:9976849..9976873 (25 bp)
GGGCAAGCAGAGTCCTCCGATTTTT
LOC_Os03g17950
Os.53449.1.A1_at--214--4231Chr03:9976865..9976889 (25 bp)
CCGATTTTTGCTCTGTACTGGGACA
LOC_Os03g17950
Os.53449.1.A1_at--1046--2071Chr03:9977652..9977676 (25 bp)
ACATAGGTTCTTCCGCCTTGAACAT
LOC_Os03g17950
Os.53449.1.A1_at--225--2511Chr03:9977672..9977696 (25 bp)
AACATCCTGTCAGTTCTTGATTCAG
LOC_Os03g17950
Os.53449.1.A1_at--778--1531Chr03:9977826..9977850 (25 bp)
AGCATGCTTCGAACTAACCTACTGT
LOC_Os03g17950
Os.53449.1.A1_at--14--5651Chr03:9977876..9977900 (25 bp)
GACAGCTGAATTTGTGCCCCAGGTT
LOC_Os03g17950
Os.53449.1.A1_at--432--7591Chr03:9977929..9977950 (22 bp)
GGGCATAGTCCAAGTTCCTTAATTA
LOC_Os03g17950
Target Sequence 
TACTCTGGTGCCCAATCTAGCAAAAATCCTTTATTTCTAGGAGTTCTTCCACCAAAAGAGAGGTTTCCAGAGAAGTATGT
TGCTTTGATTTCCGGCGTTCCAGCAGTTATTCACCCAGGTGCTCTTATACTGGCTGTGGGCAAGCAGAGTCCTCCGATTT
TTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGC
CACCAAATAAATGTTGGTTATNGCGGTGTAGTTAGGGGAATCCACATAGGTTCTTCCGCCTTGAACATCCTGTCAGTTCT
TGATTCAGACATGGAAAGCTGAAGGACTGCGTGCTGCTTGCCTGATATCACATCAGCAGGAGCTAAAGATGGTTTTGTAG
TTTGTACTTTGAGGAGATAAATTNTGATCAGCCAGTTGCTGAATGTAAACTAACACCAGCATGCTTCGAACTAACCTACT
GTTNGATCTGATTTGTCCTGGTGAAGNGACAGCTGAATTTGTGCCCCAGGTTGTANTAGTATCTTGCTCTTGAATAGGGC
ATAGTCCAAGTTCCTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53449.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis