Browse Element(s) Details


OsAffx.27508.63.S1_s_at

Description gb:AK063268.1
DB_XREF= gi:32973286
TID=OsAffx.27508.63
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B06, full insert sequence.
FL= gb:AK063268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1791011/11kinesin like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.63.S1_s_at--801--4451Chr03:9959428..9959452 (25 bp)
GCCTAAGAAGCTTTCACTAGAGGAT
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--402--7991Chr03:9959449..9959572 (25 bp)
GGATGAGCTGAAGGCTTTGCAGCAA
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--40--4971Chr03:9959640..9959664 (25 bp)
GCATCATTTACCACCCTGAGAAGCA
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--222--2331Chr03:9959670..9959694 (25 bp)
AAAGTCTCATCATTTTTTCCTTCGT
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--114--491Chr03:9959698..9959722 (25 bp)
ATCTGTTTAATGCTGACTGCCCAAA
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--740--611Chr03:9959707..9959731 (25 bp)
ATGCTGACTGCCCAAATGAGATGAG
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--254--8151Chr03:9959731..9959755 (25 bp)
GGAAATTCCAGCATTGTAGCCGGCA
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--1031--31Chr03:9959743..9959767 (25 bp)
ATTGTAGCCGGCAACAACCTCCAGT
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--864--8231Chr03:9959752..9959776 (25 bp)
GGCAACAACCTCCAGTATTATCATG
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--302--8911Chr03:9959775..9959799 (25 bp)
TGAGAACTCTATGTTCTTTCTGCCA
LOC_Os03g17910
OsAffx.27508.63.S1_s_at--827--10491Chr03:9959813..9959837 (25 bp)
TTAAGGTGATGATTCTTGAACTGTA
LOC_Os03g17910
Target Sequence 
GCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAGGCTTTGCAGCAAAAGGAGGACATAAACAACTATGACTACAAGAGGA
TTCCCAGACCCAATGAGAAATAATTGAAGTAAAGCATCATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTT
TCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAG
TATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.63.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis