Browse Element(s) Details


Os.25160.1.S1_at

Description gb:AK060694.1
DB_XREF= gi:32970712
TID=Os.25160.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D04, full insert sequence.
FL= gb:AK102350.1 gb:AK060694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5033011/11Protein kinase domain containing protein, expressed
LOC_Os03g179401/11PAP2 superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50310Os.17487.1.S1_at11/113+28636132..28638887CCT motif family protein, expressed
LOC_Os03g50320Os.4752.1.S1_at11/113+28639490..28645929Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g50330Os.25160.1.S1_at11/113+28657837..28665388Protein kinase domain containing protein, expressed
LOC_Os03g50340Os.37960.1.S1_at11/113+28668569..28673886Coatomer alpha subunit, putative, expressed
LOC_Os03g50350Os.37960.2.S1_at11/113+28680059..28685363Coatomer alpha subunit, putative, expressed
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25160.1.S1_at--624--8291Chr03:28658378..28658402 (25 bp)
GGCTTGTTCACAGTTTATCATCCGA
LOC_Os03g50330
Os.25160.1.S1_at--546--10151Chr03:28658363..28658387 (25 bp)
TATCATCCGATGGTTTACTGTAGAT
LOC_Os03g50330
Os.25160.1.S1_at--836--6371Chr03:28658303..28658327 (25 bp)
GATCGACAAACCGTGTTACTCTTTT
LOC_Os03g50330
Os.25160.1.S1_at--422--10471Chr03:28658261..28658285 (25 bp)
TTACCGATTGACCTGTTGGTTGCTC
LOC_Os03g50330
Os.25160.1.S1_at--267--3751Chr03:28658234..28658258 (25 bp)
CTCACCACCTCTGCAAGTTTTGTTG
LOC_Os03g50330
Os.25160.1.S1_at--134--8091Chr03:28658199..28658223 (25 bp)
GGAGCCCCTGTTTCCATTTTTCTGT
LOC_Os03g50330
Os.25160.1.S1_at--668--10852Chr03:28658165..28658189 (25 bp)
TTGGCTGCTGCAACATGTAAGCTTT
LOC_Os03g50330
Os.25160.1.S1_at--188--6791Chr03:28658059..28658083 (25 bp)
GTTAGCAATTCATGAGCACCGAGTA
LOC_Os03g50330
Os.25160.1.S1_at--757--4731Chr03:28658021..28658045 (25 bp)
GCTGATCTGCGGGTACCCTTAAAAG
LOC_Os03g50330
Os.25160.1.S1_at--1138--7911Chr03:28657957..28657981 (25 bp)
GGTTGGAAGATGTGGCCAGCACCAT
LOC_Os03g50330
Os.25160.1.S1_at--177--8451Chr03:28657944..28657968 (25 bp)
GGCCAGCACCATCCTATATTAGATT
LOC_Os03g50330
Target Sequence 
GGCTTGTTCACAGTTTATCATCCGATGGTTTACTGTAGATAGGCGATGAGTGTGGCTAAACAAAGAAAGTGAGATGATCG
ACAAACCGTGTTACTCTTTTTTGTGTTCTTCCTCCCTTTACCGATTGACCTGTTGGTTGCTCGCCTCACCACCTCTGCAA
GTTTTGTTGCCNAACCGAGGGAGCCCCTGTTTCCATTTTTCTGTAGATCAATTTTGGCTGCTGCAACATGTAAGCTTTTT
TCATTTGGTTGTTGAATCCAGTATAGCAACCATTCATAGAAAATATAGTGCAAAATTCTTTGTGAAGGCTGTAGTCGNTG
TTAGCAATTCATGAGCACCGAGTACAGNATGGGTGCAGGCTGATCTGCGGGTACCCTTAAAAGTGAGATTTAGTTTATTT
TNAGTTTTAGTTGAACTATGGNTGGGTTGGAAGATGTGGCCAGCACCATCCTATATTAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis