Browse Element(s) Details


Os.4752.1.S1_at

Description gb:AK063479.1
DB_XREF= gi:32973497
TID=Os.4752.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B07, full insert sequence.
FL= gb:AK063479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5032011/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein
LOC_Os03g50310Os.17487.1.S1_at11/113+28636132..28638887CCT motif family protein, expressed
LOC_Os03g50320Os.4752.1.S1_at11/113+28639490..28645929Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g50330Os.25160.1.S1_at11/113+28657837..28665388Protein kinase domain containing protein, expressed
LOC_Os03g50340Os.37960.1.S1_at11/113+28668569..28673886Coatomer alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4752.1.S1_at--568--2131Chr03:28639951..28639975 (25 bp)
ACAGTGGCCTGCCTTGCTTTAGCAG
LOC_Os03g50320
Os.4752.1.S1_at--821--7631Chr03:28639926..28639950 (25 bp)
GGGAGAACCTATCGCTAATCTGCGA
LOC_Os03g50320
Os.4752.1.S1_at--683--5451Chr03:28639881..28639905 (25 bp)
GAACGAGCGTGAGGCTGCTAATTTT
LOC_Os03g50320
Os.4752.1.S1_at--625--6351Chr03:28639838..28639862 (25 bp)
GATGCCTACAACAAATGGACTACCG
LOC_Os03g50320
Os.4752.1.S1_at--924--9951Chr03:28639818..28639842 (25 bp)
TACCGCAGGGTACGACTTGATTCAA
LOC_Os03g50320
Os.4752.1.S1_at--572--5451Chr03:28639663..28639687 (25 bp)
GAACGGTGATTTCAAGCGACTAACA
LOC_Os03g50320
Os.4752.1.S1_at--118--10411Chr03:28639596..28639620 (25 bp)
TTGTTCCTTTTGTAAGACAGCCGAG
LOC_Os03g50320
Os.4752.1.S1_at--44--5651Chr03:28639581..28639605 (25 bp)
GACAGCCGAGCTAGTAATTCTATTG
LOC_Os03g50320
Os.4752.1.S1_at--610--3151Chr03:28639566..28639590 (25 bp)
AATTCTATTGGATCGCGTCTTACAG
LOC_Os03g50320
Os.4752.1.S1_at--456--5451Chr03:28639542..28639566 (25 bp)
GAACGAATGGGTCTTTGTATTGGCA
LOC_Os03g50320
Os.4752.1.S1_at--666--6871Chr03:28639510..28639534 (25 bp)
GTATTGTTATCTTCTTTTCGCGAAT
LOC_Os03g50320
Target Sequence 
ACAGTGGCCTGCCTTGCTTTAGCAGGGGAGAACCTATCGCTAATCTGCGAAAACGTTTTCATCCAGAGATGAACGAGCGT
GAGGCTGCTAATTTTATGGTCAGAACATGTGTGGATGCCTACAACAAATGGACTACCGCAGGGTACGACTTGATTCAATA
CTTGCAGCAGGGTATTGAGAAATAGTCTATTTCTCCTTTTGTAAATGGGGGGTCGTGTACATCAATTGTATGTAGCCACT
AATTCTTTTATGTAGAATTATGTTGTTGAGCGGTTCATTGTATGGTAAGAACGGTGATTTCAAGCGACTAACAGAGGGTG
TATCAGTGTAAGTTAAACAGTGCCTATTCATTTTTTTGTTCCTTTTGTAAGACAGCCGAGCTAGTAATTCTATTGGATCG
CGTCTTACAGAACGAATGGGTCTTTGTATTGGCATGNGGATGTATTGTTATCTTCTTTTCGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis