Browse Element(s) Details


Os.25254.2.S1_at

Description gb:CB661798
DB_XREF= gi:29665523
DB_XREF=OSJNEd05C05.f
CLONE=OSJNEd05C05
TID=Os.25254.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25254 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566611.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5030011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein
LOC_Os03g50310Os.17487.1.S1_at11/113+28636132..28638887CCT motif family protein, expressed
LOC_Os03g50320Os.4752.1.S1_at11/113+28639490..28645929Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003777molecular_functionmicrotubule motor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25254.2.S1_at--1162--2431Chr03:28624760..28624780 (21 bp)
AAAAGGTTCAGATTTTGCAGGCTGT
LOC_Os03g50300
Os.25254.2.S1_at--485--9851Chr03:28625091..28625115 (25 bp)
TACAACTCCATTGAAGCTGAAGATT
LOC_Os03g50300
Os.25254.2.S1_at--163--6591Chr03:28625112..28625136 (25 bp)
GATTGGGAGCTAGCAACAAATGGTG
LOC_Os03g50300
Os.25254.2.S1_at--810--5171Chr03:28625146..28625170 (25 bp)
GCAAGTTGGAAGCTTTGCTTCTTGA
LOC_Os03g50300
Os.25254.2.S1_at--812--7691Chr03:28626272..28626296 (25 bp)
GGGTACTGATCCAAGGCATGCACCA
LOC_Os03g50300
Os.25254.2.S1_at--669--2931Chr03:28626284..28626308 (25 bp)
AAGGCATGCACCACAAGACCAAGAC
LOC_Os03g50300
Os.25254.2.S1_at--276--2831Chr03:28626311..28626335 (25 bp)
AAGTTCCATGCTTAAGGTCATTTGC
LOC_Os03g50300
Os.25254.2.S1_at--1136--2891Chr03:28626324..28626348 (25 bp)
AAGGTCATTTGCAATCAGAGGGATC
LOC_Os03g50300
Os.25254.2.S1_at--95--9651Chr03:28626338..28626362 (25 bp)
TCAGAGGGATCGTTTCCGTACACGT
LOC_Os03g50300
Os.25254.2.S1_at--444--11Chr03:28626346..28626370 (25 bp)
ATCGTTTCCGTACACGTCTACGTGA
LOC_Os03g50300
Os.25254.2.S1_at--278--3351Chr03:28626358..28626381 (24 bp)
CACGTCTACGTGAAACTGAGGAGGA
LOC_Os03g50300
Target Sequence 
AAAAGGTTCAGATTTTGCAGGCTGTAGGGNTACAACTCCATTGAAGCTGAAGATTGGGAGCTAGCAACAAATGGTGAAGA
AATGAGCAAGTTGGAAGCTTTGCTTCTTGATAAGAANCCGNAAAATGGAGCATGAACTAACACAGCTGNAGGTCAAAANT
ATCAGAGAAGTCAAATCNTTCTTGAGGANGCTNGAAAAAAAGATTNNTGNGCTANCTGCAAAGGCTGAANANCNANCAGN
AGTTGATTTTGNAACTCGAGGNTGANCANNCTAAAGGGCTNNNGTNCAACTGATAGGAGGACTNCACTTNNTGAATGATT
GGGATCTTNAANAAATTGGCTCAAATGAAGTAGCAGAGGGTACTGATCCAAGGCATGCACCACAAGACCAAGACCAAAGT
TCCATGCTTAAGGTCATTTGCAATCAGAGGGATCGTTTCCGTACACGTCTACGTGAAACTGAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25254.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis