Browse Element(s) Details


OsAffx.13438.1.S1_s_at

Description tigr:9631.m04918
TID=OsAffx.13438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5036411/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50330Os.25160.1.S1_at11/113+28657837..28665388Protein kinase domain containing protein, expressed
LOC_Os03g50340Os.37960.1.S1_at11/113+28668569..28673886Coatomer alpha subunit, putative, expressed
LOC_Os03g50350Os.37960.2.S1_at11/113+28680059..28685363Coatomer alpha subunit, putative, expressed
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50380OsAffx.25657.1.S1_s_at11/113+28695843..28697886Transcription factor S-II family protein, expressed
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13438.1.S1_s_at--64--3451Chr03:28690771..28690795 (25 bp)
CAGTTCGCCGAGGTCGGCTTCGTGT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--463--4511Chr03:28690722..28690746 (25 bp)
GCCGAAAGAGGAATCGCTAACATTT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--982--9111Chr03:28690675..28690699 (25 bp)
TGCTGTTGTTTCATGTGGAGTTCTT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--994--10531Chr03:28690666..28690690 (25 bp)
TTCATGTGGAGTTCTTTCTCCGTTC
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--285--9491Chr03:28690650..28690674 (25 bp)
TCTCCGTTCGTGTTGTTCTAATTCA
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--1122--10531Chr03:28690635..28690659 (25 bp)
TTCTAATTCAGGGAGGAGCGTGTGT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--395--8671Chr03:28690547..28690571 (25 bp)
TGTGTTTTCAGTTCGTGGTGTTGCT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--40--8611Chr03:28690532..28690556 (25 bp)
TGGTGTTGCTGCTACCCTTTTGTCG
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--325--10411Chr03:28690515..28690539 (25 bp)
TTTTGTCGCCGGAGCAGCCTTTGCT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--1067--3371Chr03:28690501..28690525 (25 bp)
CAGCCTTTGCTTCCCGGTGGTGTAT
LOC_Os03g50364
OsAffx.13438.1.S1_s_at--827--4891Chr03:28690493..28690517 (25 bp)
GCTTCCCGGTGGTGTATCCTGTATC
LOC_Os03g50364
Target Sequence 
CAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCA
AGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTG
TAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGT
GGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13438.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis