Browse Element(s) Details


Os.54618.1.S1_at

Description gb:AK106258.1
DB_XREF= gi:32991467
TID=Os.54618.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F02, full insert sequence.
FL= gb:AK106258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50380OsAffx.25657.1.S1_s_at11/113+28695843..28697886Transcription factor S-II family protein, expressed
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54618.1.S1_at--1071--2451Chr03:28720486..28720510 (25 bp)
AACAAGAACTGGATGTGCCCTCACT
LOC_Os03g50420
Os.54618.1.S1_at--1101--6491Chr03:28720542..28720666 (25 bp)
GATATGTAACAGCTCCATCTGCTTG
LOC_Os03g50420
Os.54618.1.S1_at--400--5211Chr03:28720692..28720839 (25 bp)
GAATTGCCATATACGACGCGCGGGA
LOC_Os03g50420
Os.54618.1.S1_at--1128--2891Chr03:28720842..28720866 (25 bp)
AAGGTTACGAGTCTGTTGCGCACCT
LOC_Os03g50420
Os.54618.1.S1_at--429--2851Chr03:28720883..28720907 (25 bp)
AAGTGCCGAGCATTCTGAGGTCTTC
LOC_Os03g50420
Os.54618.1.S1_at--1042--8871Chr03:28720898..28720922 (25 bp)
TGAGGTCTTCTATGTCGTTCAGAGA
LOC_Os03g50420
Os.54618.1.S1_at--169--1871Chr03:28720922..28720946 (25 bp)
ACGACGATGATGTTTGCCTAGCGCA
LOC_Os03g50420
Os.54618.1.S1_at--26--4531Chr03:28720962..28720986 (25 bp)
GCCCCTTTTGTTTTGTTGACAGTAG
LOC_Os03g50420
Os.54618.1.S1_at--932--5411Chr03:28721064..28721088 (25 bp)
GAACCTTTTGTAGCCGATGTTTCCA
LOC_Os03g50420
Os.54618.1.S1_at--684--3891Chr03:28721113..28721137 (25 bp)
CTGGGCTATTGACTGTTCTTCTGAA
LOC_Os03g50420
Os.54618.1.S1_at--542--1731Chr03:28721192..28721216 (25 bp)
ACCATAACTGTGTCTGCTACTTGCT
LOC_Os03g50420
Target Sequence 
AACAAGAACTGGATGTGCCCTCACTGTATTGAGGAGAAGGGTACCAAGAAATTCTGGATATGTAACAGCTCCATCTGCTT
GAAGAAGAGGAAGTTATCACCAACTGGAATTGCCATATACGACGCGCGGGAGCAAGGTTACGAGTCTGTTGCGCACCTTC
TCATGGACAAGCTGAAGTGCCGAGCATTCTGAGGTCTTCTATGTCGTTCAGAGACGACGATGATGTTTGCCTAGCGCACT
GGAAGGTGGAAGGGCCCCTTTTGTTTTGTTGACAGTAGGTATGACGCACTTTAGGAGAAAAACTAGTGTAGAAATGAGTA
CCACTATTGTGCTCAAGATTGTGAATCTAGTACTAGAACCTTTTGTAGCCGATGTTTCCATATGCTGCTTGTGTTTGGGG
GCAGCTGGGCTATTGACTGTTCTTCTGAAGATCCAAGCAAGGGAACATGTATTGCCTTTTCAATCAGTGGTTGATGAGTC
ATGACCATAACTGTGTCTGCTACTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis