Browse Element(s) Details


Os.49263.1.S1_at

Description gb:AK111063.1
DB_XREF= gi:32996272
TID=Os.49263.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D10, full insert sequence.
FL= gb:AK111063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5045011/11atypical receptor-like kinase MARK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49263.1.S1_at--1001--5791Chr03:28747309..28747333 (25 bp)
GACGCACCAAGACGCGGTCTATGGA
LOC_Os03g50450
Os.49263.1.S1_at--795--8391Chr03:28747241..28747265 (25 bp)
GGCCGTAAACCACCTGAGATGACCA
LOC_Os03g50450
Os.49263.1.S1_at--955--3751Chr03:28747168..28747192 (25 bp)
CTCTCGGTCAGTCGACTTCAGGGAA
LOC_Os03g50450
Os.49263.1.S1_at--489--2691Chr03:28747142..28747166 (25 bp)
AAGCTGATCTTCTTCGGGTCTGCGG
LOC_Os03g50450
Os.49263.1.S1_at--892--891Chr03:28747056..28747080 (25 bp)
AGGCGCATTCGGGACGACGTACAAA
LOC_Os03g50450
Os.49263.1.S1_at--637--5771Chr03:28747044..28747068 (25 bp)
GACGACGTACAAAGCTGTTCTTGAA
LOC_Os03g50450
Os.49263.1.S1_at--245--1331Chr03:28746997..28747021 (25 bp)
AGAGGCTCAAGGATGTGACCCTGAC
LOC_Os03g50450
Os.49263.1.S1_at--363--6271Chr03:28746986..28747010 (25 bp)
GATGTGACCCTGACCGAGCCGGAGT
LOC_Os03g50450
Os.49263.1.S1_at--22--31Chr03:28746941..28746965 (25 bp)
ATTGGCGAGCTGCAGCACGAGTTCA
LOC_Os03g50450
Os.49263.1.S1_at--399--1691Chr03:28746845..28746869 (25 bp)
AGCCTCTCTGCGGTTTTGCATGGTG
LOC_Os03g50450
Os.49263.1.S1_at--250--10271Chr03:28746831..28746855 (25 bp)
TTTGCATGGTGAGAACTTGACAGTT
LOC_Os03g50450
Target Sequence 
GACGCACCAAGACGCGGTCTATGGAGATGCCGCCGCCTCCGTCTTCGGCTCCTGCCGTTGTCGCCGCCGGCCGTAAACCA
CCTGAGATGACCAGCGCCGCGGCCGTAGCACCCATGGCCACCGTGGGCAATCCTCACGCCCCTCTCGGTCAGTCGACTTC
AGGGAAGAAGCTGATCTTCTTCGGGTCTGCGGCCGCAGTGGCGCCCTTCGACCTGGAGGACCTGCTGCGTGCATCCGCCG
AGGTGCTTGGGAAAGGCGCATTCGGGACGACGTACAAAGCTGTTCTTGAATCCGGGGCGACGGTGGCAGTGAAGAGGCTC
AAGGATGTGACCCTGACCGAGCCGGAGTNCCGTGACCGGATTNNTGACATTGGCGAGCTGCAGCACGAGTTCATCGNNCC
CCTNCGTNCCTATTACTACAGCNNNGNCGAGAAGCTNNNCGTCNACGACTTCATGCCCATGGGCAGCCTCTCTGCGGTTT
TGCATGGTGAGAACTTGACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis