Browse Element(s) Details


Os.3064.1.S1_at

Description gb:AK120951.1
DB_XREF= gi:37990574
TID=Os.3064.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038L10, full insert sequence.
FL= gb:AK120951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5044010/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3064.1.S1_at--1162--2071Chr03:28734704..28734728 (25 bp)
ACATATATATGCGTTCCTGGACAGG
LOC_Os03g50440
Os.3064.1.S1_at--817--8111Chr03:28734722..28734746 (25 bp)
GGACAGGAACTATCATTGGCCCTCC
LOC_Os03g50440
Os.3064.1.S1_at--637--10871NONE
TTGGCCCTCCTAATACTGTTCATGA
NONE
Os.3064.1.S1_at--977--331Chr03:28734886..28734910 (25 bp)
ATACAGACTATCCAGACAGACCACC
LOC_Os03g50440
Os.3064.1.S1_at--966--1351Chr03:28734903..28734927 (25 bp)
AGACCACCTACTGTTCGATTCCAGA
LOC_Os03g50440
Os.3064.1.S1_at--83--8571Chr03:28735053..28735076 (24 bp)
TGGTTGAACCAAGTCTATTCCCCAT
LOC_Os03g50440
Os.3064.1.S1_at--273--10131Chr03:28735067..28735091 (25 bp)
TATTCCCCATGCTTGGTAACTGGCA
LOC_Os03g50440
Os.3064.1.S1_at--1035--331Chr03:28735100..28735124 (25 bp)
ATACAATGCAAGACATCCTGATCGG
LOC_Os03g50440
Os.3064.1.S1_at--693--4271Chr03:28735147..28735171 (25 bp)
CCTCAGAATCGTAGGCTCCATCAAC
LOC_Os03g50440
Os.3064.1.S1_at--1016--4331Chr03:28735625..28735649 (25 bp)
CCATGATCTCCTGTAATTTGGCAGT
LOC_Os03g50440
Os.3064.1.S1_at--899--2071Chr03:28735654..28735678 (25 bp)
ACATTGGATCCAAACCGTGCTGTCG
LOC_Os03g50440
Target Sequence 
ACATATATATGCGTTCCTGGACAGGAACTATCATTGGCCCTCCTAATACTGTTCATGAGGGACGAATCTATCAGTTGAAG
TTGTTCTGTGATACAGACTATCCAGACAGACCACCTACTGTTCGATTCCAGACTCGAATCAATANGTCATGTGTGAATCA
AGAAACTGGAATGGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAATGCAAGACATCCTGA
TCGGNCTTAAAAAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGGCAATGAAGATCAAAGAGT
AGAACAGAAAGGGCTATCGCTTAGGTGTGTCATCATGTAAGAGATGCGAATTGCAATGTACAGTATTATTAAATTGAGTA
GCATCAGGCGCAAAAAAGAGANNACCCATGATCTCCTGTAATTTGGCAGTAACTACATTGGATCCAAACCGTGCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis