Browse Element(s) Details


OsAffx.13439.1.S1_at

Description tigr:9631.m04923
TID=OsAffx.13439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative calmodulin-binding heat-shock protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5041011/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50380OsAffx.25657.1.S1_s_at11/113+28695843..28697886Transcription factor S-II family protein, expressed
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13439.1.S1_at--472--9471Chr03:28716785..28716809 (25 bp)
TCTGCAACACATCTTCGGATCAATT
LOC_Os03g50410
OsAffx.13439.1.S1_at--1025--7931Chr03:28716801..28716959 (25 bp)
GGATCAATTTTCTGTTTGCCGTGCC
LOC_Os03g50410
OsAffx.13439.1.S1_at--810--6331Chr03:28717013..28717037 (25 bp)
GATGCATCTAAACTCTACGCTCCAG
LOC_Os03g50410
OsAffx.13439.1.S1_at--641--3431Chr03:28717236..28717260 (25 bp)
CAGATGTGGGAGACTTCCGCCGCAG
LOC_Os03g50410
OsAffx.13439.1.S1_at--695--7491Chr03:28717300..28717324 (25 bp)
GTGGTGTTGTCATGCAACGCCACTT
LOC_Os03g50410
OsAffx.13439.1.S1_at--959--4391Chr03:28717318..28717342 (25 bp)
GCCACTTCTGACCACGGGATTATTT
LOC_Os03g50410
OsAffx.13439.1.S1_at--1152--1411Chr03:28717739..28717763 (25 bp)
AGAAACGGAATCACTCGCAGACCAC
LOC_Os03g50410
OsAffx.13439.1.S1_at--405--2352Chr03:28717766..28717790 (25 bp)
AAAGCTCAGTGCAGGGAATCCACAA
LOC_Os03g50410
OsAffx.13439.1.S1_at--876--1171Chr03:28717824..28717848 (25 bp)
AGTAGCCCTAGAACTTCGACGACAT
LOC_Os03g50410
OsAffx.13439.1.S1_at--575--5791Chr03:28717841..28717865 (25 bp)
GACGACATCATCATTGCGCAGCGAA
LOC_Os03g50410
OsAffx.13439.1.S1_at--263--10691Chr03:28717854..28717878 (25 bp)
TTGCGCAGCGAATCGTCGTCGACGA
LOC_Os03g50410
Target Sequence 
TCTGCAACACATCTTCGGATCAATTTTCTGTTTGCCGTGCCTGCTGTGTTTCATTTGCATGAGAGACACGTTTGTGTCAG
AAGAGAAGCTTAAGGATGCATCTAAACTCTACGCTCCAGGAAGAGTCTTTCATATCGTGGAGAGGGAGAACTGCAGATGT
GGGAGACTTCCGCCGCAGGTCAGAACGGCAGTGCCAGCAGAGGGCAGATTTGAGCATGTGGTGTTGTCATGCAACGCCAC
TTCTGACCACGGGATTATTTGGATCGAAAAGGAGGCTCAAAAGGCTTTGGATTTAATGGAGCAAGAAGAATTGACACTAC
CCCCATCCCAGCAAAAGATGCTCAGAGTGAAAGAAACGGAATCACTCGCAGACCACCAAAAGCTCAGTGCAGGGAATCCA
CAAGAAGACGACACCCTCTCCTCCTCGTCACCGTTCAGTAGCCCTAGAACTTCGACGACATCATCATTGCGCAGCGAATC
GTCGTCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis