Browse Element(s) Details


OsAffx.25657.1.S1_s_at

Description tigr:9631.m04920
TID=OsAffx.25657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA polymerase I subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5038011/11Transcription factor S-II family protein, expressed
LOC_Os03g605501/11ThiF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50340Os.37960.1.S1_at11/113+28668569..28673886Coatomer alpha subunit, putative, expressed
LOC_Os03g50350Os.37960.2.S1_at11/113+28680059..28685363Coatomer alpha subunit, putative, expressed
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50380OsAffx.25657.1.S1_s_at11/113+28695843..28697886Transcription factor S-II family protein, expressed
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009734biological_processauxin mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003824molecular_functioncatalytic activity
GO:0008642molecular_functionubiquitin-like activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25657.1.S1_s_at--765--5891Chr03:28697170..28697194 (25 bp)
GAGCTAAAACTTGATCCATATGTGA
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--151--2291Chr03:28697345..28697369 (25 bp)
AAATGCAAAAATCCTGAACTTCAGT
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--172--5491Chr03:28697360..28697383 (24 bp)
GAACTTCAGTATTACACCAAGCAGT
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--1071--3231Chr03:28697479..28697500 (22 bp)
CAAGCAGTTACGGTCAGCAGATGAG
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--72--1131Chr03:28697520..28697544 (25 bp)
AGTGCGCAAACTGCAGGCATGAGTT
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--1021--8891Chr03:28697572..28697596 (25 bp)
TGAGCTTTTTGATCACTTCTACGAT
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--532--6451Chr03:28697582..28697606 (25 bp)
GATCACTTCTACGATTGTGGTCTAA
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--296--2311Chr03:28697608..28697632 (25 bp)
AAATGGCCATGCTTTGACATGACAA
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--25--10091Chr03:28697705..28697729 (25 bp)
TAGGAACCTCTTCCCCGTGCATGGA
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--91--2592Chr03:28697771..28697795 (25 bp)
AACGCATGGTTTAGCAGTTTGCCAA
LOC_Os03g50380
OsAffx.25657.1.S1_s_at--276--2511Chr03:28697797..28697821 (25 bp)
AACATTGTATGTGCTTGGAAAACGA
LOC_Os03g50380
Target Sequence 
GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACACTGAAGGAGGAAGACGTAATTGTCGAAAGAGCTACAGTAAA
TAAAGAGTGTGAAAAATGCAAAAATCCTGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTG
TTTTCTATAAGTGCGCAAACTGCAGGCATGAGTTCAATGAGAACCAGTAGTCACCTTAGAATGAGCTTTTTGATCACTTC
TACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAAT
TATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTG
CATTATTAATTAAGTACTTTAACGCATGGTTTAGCAGTTTGCCAAAAACATTGTATGTGCTTGGAAAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25657.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis