Browse Element(s) Details


Os.31906.1.S1_s_at

Description gb:AK122108.1
DB_XREF= gi:37991754
TID=Os.31906.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126F17, full insert sequence.
FL= gb:AK122108.1 gb:AK106520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5039011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50350Os.37960.2.S1_at11/113+28680059..28685363Coatomer alpha subunit, putative, expressed
LOC_Os03g50364OsAffx.24307.1.S1_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.13438.1.S1_s_at11/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50364OsAffx.24307.2.S1_at3/113+28690225..28695451AT hook motif family protein, expressed
LOC_Os03g50380OsAffx.25657.1.S1_s_at11/113+28695843..28697886Transcription factor S-II family protein, expressed
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31906.1.S1_s_at--463--6811Chr03:28699962..28699986 (25 bp)
GTTTTCGAACAATTCCCGTGTCATC
LOC_Os03g50390
Os.31906.1.S1_s_at--716--2231Chr03:28699954..28699978 (25 bp)
ACAATTCCCGTGTCATCATCGATGA
LOC_Os03g50390
Os.31906.1.S1_s_at--878--8951Chr03:28699932..28699956 (25 bp)
TGAAACATCCTTGACCATAAGTTGG
LOC_Os03g50390
Os.31906.1.S1_s_at--94--4651Chr03:28699904..28699928 (25 bp)
GCGTCACCTAGGAGCGCTGTTTTTT
LOC_Os03g50390
Os.31906.1.S1_s_at--1126--451Chr03:28699858..28699882 (25 bp)
ATCGGCCTTGGGTGCCACCAAGATT
LOC_Os03g50390
Os.31906.1.S1_s_at--413--6151Chr03:28699723..28699747 (25 bp)
GAGGTATCCCTGTACTCGGAACTAT
LOC_Os03g50390
Os.31906.1.S1_s_at--1018--291Chr03:28699656..28699680 (25 bp)
ATAGCAGTGCTCAAATTTTCTCGGG
LOC_Os03g50390
Os.31906.1.S1_s_at--303--331Chr03:28699625..28699649 (25 bp)
ATACTGCTCTGTTTGGTTCGCTTGG
LOC_Os03g50390
Os.31906.1.S1_s_at--290--5731Chr03:28699553..28699577 (25 bp)
GACTGCGCGGTCTTGAGTTCTTTTC
LOC_Os03g50390
Os.31906.1.S1_s_at--281--3471Chr03:28699498..28699522 (25 bp)
CAGTGGAGGTGGCTATTACGTCTAA
LOC_Os03g50390
Os.31906.1.S1_s_at--423--2971Chr03:28699429..28699453 (25 bp)
AATGTAGGTTTGCTACTACTCCCTC
LOC_Os03g50390
Target Sequence 
GTTTTCGAACAATTCCCGTGTCATCATCGATGAAACATCCTTGACCATAAGTTGGAANGCGTCACCTAGGAGCGCTGTTT
TTTTCCCTTCTCTTACCGCACTTCATCGGCCTTGGGTGCCACCAAGATTTGGTCAAGGTTACTGTATGCAAATAGAACCC
TTGAAGATGTAGATGGTCTGAGCAATTTTTCATTGTGGCATGTGATTGGGAATGACCGAATGAAGTTCCTGTCATCTCGG
AGGTATCCCTGTACTCGGAACTATCAACACTTCAAAATACCATTCACTGGGTATAAATCTGGTTAAATAGCAGTGCTCAA
ATTTTCTCGGGGCAAGTATACTGCTCTGTTTGGTTCGCTTGGTTAGTCAATGGATTCACTGTATCTTTACCAATCGAGGG
AACTCGGGAGACTGCGCGGTCTTGAGTTCTTTTCTCGTAGAGAATGGTGAATGCCTAAGTTTTGCAGTGGAGGTGGCTAT
TACGTCTAATTTCATTCCTGTTAACAACCAATAAATTATGAGGTAATATGTATAATGTAGGTTTGCTACTACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31906.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis