Browse Element(s) Details


Os.25159.1.S1_at

Description gb:AK073205.1
DB_XREF= gi:32983228
TID=Os.25159.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024G06, full insert sequence.
FL= gb:AK098968.1 gb:AK073205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5043011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50390Os.31906.1.S1_s_at11/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50390Os.30696.1.S1_at1/113+28699223..28711425protein kinase, putative, expressed
LOC_Os03g50400OsAffx.3563.1.S1_at10/113+28712410..28714048hypothetical protein
LOC_Os03g50400OsAffx.2708.1.S1_x_at1/113+28712410..28714048hypothetical protein
LOC_Os03g50410OsAffx.13439.1.S1_at11/113+28715930..28717988Lipase family protein
LOC_Os03g50410OsAffx.31445.1.S1_x_at1/113+28715930..28717988Lipase family protein
LOC_Os03g50420Os.54618.1.S1_at11/113+28719137..28721294expressed protein
LOC_Os03g50430Os.25159.1.S1_at11/113+28723762..28726417zinc finger family protein, putative, expressed
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005488molecular_functionbinding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.25159.1.S1_at--1058--4871Chr03:28725853..28725877 (25 bp)
GCTATTTCATTTATCCAAGATGGCA
LOC_Os03g50430
Os.25159.1.S1_at--1014--6191Chr03:28725871..28725895 (25 bp)
GATGGCATCCAATCGAGGAGGCAAA
LOC_Os03g50430
Os.25159.1.S1_at--669--8231Chr03:28725890..28725914 (25 bp)
GGCAAATTCTGCAAAATAAGGCTCC
LOC_Os03g50430
Os.25159.1.S1_at--781--351Chr03:28725905..28725929 (25 bp)
ATAAGGCTCCATTGTCTGACGAAGA
LOC_Os03g50430
Os.25159.1.S1_at--728--6691Chr03:28726008..28726032 (25 bp)
GTTCCTTGAAAGTTTTCCCATCATT
LOC_Os03g50430
Os.25159.1.S1_at--916--5351Chr03:28726129..28726153 (25 bp)
GAAGAAAGTAATCGGCCTTCGTGCC
LOC_Os03g50430
Os.25159.1.S1_at--922--4511Chr03:28726151..28726175 (25 bp)
GCCCCGTTCGTATTCCGAGAAGCAT
LOC_Os03g50430
Os.25159.1.S1_at--115--10551Chr03:28726215..28726239 (25 bp)
TTCATCATGGTTTTCTGGTGGTACT
LOC_Os03g50430
Os.25159.1.S1_at--1072--4411Chr03:28726266..28726290 (25 bp)
GCCAGATTTCTGTAAACGCTAGTAT
LOC_Os03g50430
Os.25159.1.S1_at--984--2591Chr03:28726280..28726304 (25 bp)
AACGCTAGTATCTGCACAATTTCAT
LOC_Os03g50430
Os.25159.1.S1_at--479--9631Chr03:28726343..28726367 (25 bp)
TCATGTCTCGCAAAGAACTTCAGTA
LOC_Os03g50430
Target Sequence
GCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTC
AGACTTNTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACANNANCNNATTCCCCCAATAAAGAAGGATTACAAGTT
CCTTGAAAGTTTTCCCATCATTGGGGGTAGGANTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAA
TGTCCAGGAGAAACAAAGGGCTCCTANCANAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGA
AGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAA
CATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTC
AGTAAGAAAAAATCATGTCTCGCAAAGAACTTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis