Browse Element(s) Details


Os.32714.1.S1_at

Description gb:AK103162.1
DB_XREF= gi:32988371
TID=Os.32714.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121D09, full insert sequence.
FL= gb:AK059587.1 gb:AK103162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g178701/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32714.1.S1_at--120--7731Chr03:9936392..9936416 (25 bp)
GGTGGAAGGCTATGCATTGTGCTCA
NONE
Os.32714.1.S1_at--130--51Chr03:9936407..9936431 (25 bp)
ATTGTGCTCATCATCTCAAAGCCCT
NONE
Os.32714.1.S1_at--515--7131Chr03:9936442..9936466 (25 bp)
GTCATCTTGAGTTGCTTGAGCTTAT
NONE
Os.32714.1.S1_at--1113--4691Chr03:9936511..9936532 (22 bp)
GCGGCTCGAACTGCACGTGCGGAAA
LOC_Os03g17870
Os.32714.1.S1_at--54--431Chr03:9937086..9937110 (25 bp)
ATCATCTGTGTGATCGTGTGTCCGT
NONE
Os.32714.1.S1_at--198--2931Chr03:9937132..9937156 (25 bp)
AAGGAGCCATATCTGCTCTGGCATA
NONE
Os.32714.1.S1_at--1137--10831Chr03:9937176..9937200 (25 bp)
TTGTGTGATCAATCTGCTGTTTCTG
NONE
Os.32714.1.S1_at--48--6851Chr03:9937194..9937218 (25 bp)
GTTTCTGTCCCTGTGCTGATACGCA
NONE
Os.32714.1.S1_at--848--1891Chr03:9937220..9937244 (25 bp)
ACGTAGCTCCTGAAACTGTCTGGTA
NONE
Os.32714.1.S1_at--227--2372Chr03:9937300..9937324 (25 bp)
AAACCATGCATGTATCTATCTAGTA
NONE
Os.32714.1.S1_at--225--451Chr03:9937317..9937341 (25 bp)
ATCTAGTACCTATAGCTTGCTGGTT
NONE
Target Sequence 
GGTGGAAGGCTATGCATTGTGCTCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATT
TCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTG
GAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGA
GTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATT
TGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATAT
GCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTG
TCTGGTATATTAATTTACTGGTGTGTTNTGTGNGGGNGGGTGNGNNANCGNATCTGTATCATATCAAACCATGCATGTAT
CTATCTAGTACCTATAGCTTGCTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis