Browse Element(s) Details


OsAffx.3263.1.S1_at

Description tigr:9631.m01754
TID=OsAffx.3263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyltransferase family 43, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1785011/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3263.1.S1_at--672--4031Chr03:9928364..9928388 (25 bp)
CGTTCAACAGCTCGGTGCTCTGGGA
LOC_Os03g17850
OsAffx.3263.1.S1_at--25--2831Chr03:9929141..9929462 (25 bp)
AAGTCCCAGGACTCGGTGAAGTTCG
LOC_Os03g17850
OsAffx.3263.1.S1_at--869--5331Chr03:9929455..9929479 (25 bp)
GAAGTTCGTACAGCAAGTGGTCCTT
LOC_Os03g17850
OsAffx.3263.1.S1_at--1039--6011Chr03:9929497..9929521 (25 bp)
GAGAGGAATTCCTTCAGACTGTTCA
LOC_Os03g17850
OsAffx.3263.1.S1_at--761--8231Chr03:9930239..9930263 (25 bp)
GGCAAAGCTTCGAACAGTCTCTCAG
LOC_Os03g17850
OsAffx.3263.1.S1_at--784--1771Chr03:9930276..9930300 (25 bp)
ACCTGGCGATCAGCGTTAGCCATTA
LOC_Os03g17850
OsAffx.3263.1.S1_at--737--9791Chr03:9930644..9930668 (25 bp)
TAACGAGCTGCTACGGGCATGTGCA
LOC_Os03g17850
OsAffx.3263.1.S1_at--56--5011Chr03:9930674..9930698 (25 bp)
GCATGGTCATGTCAGGAGCAAGCTC
LOC_Os03g17850
OsAffx.3263.1.S1_at--495--4111Chr03:9931370..9931394 (25 bp)
CGAAGTGATTTTCCCCAGACTGAAC
LOC_Os03g17850
OsAffx.3263.1.S1_at--485--8971Chr03:9931396..9931420 (25 bp)
TGAAACTTTGATCTGCCTCATCCAT
LOC_Os03g17850
OsAffx.3263.1.S1_at--948--1711Chr03:9931422..9931446 (25 bp)
ACCACGCATCTCACTACATTTATGG
LOC_Os03g17850
Target Sequence 
CGTTCAACAGCTCGGTGCTCTGGGACCCCGAGCGGTGGGGCCGGTACCCGACCTCCGAGCCCGACAAGTCCCAGGACTCG
GTGAAGTTCGTACAGCAAGTGGTCCTTGAAGATTATAGCAAAGTGAGAGGAATTCCTTCAGACTGTTCAGAGGTTATGGC
AAAGCTTCGAACAGTCTCTCAGCAATTAGAAGCGACCTGGCGATCAGCGTTAGCCATTATTAACGAGCTGCTACGGGCAT
GTGCATCGGTGCATGGTCATGTCAGGAGCAAGCTCGACAGCTTATATCGAAGTGATTTTCCCCAGACTGAACCTGAAACT
TTGATCTGCCTCATCCATGACCACGCATCTCACTACATTTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis