Browse Element(s) Details


OsAffx.12902.1.S1_at

Description tigr:9631.m01751
TID=OsAffx.12902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1782010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12902.1.S1_at--575--8811NONE
TGTTGATAAAGATTGCTGTGCCTGT
NONE
OsAffx.12902.1.S1_at--316--10712Chr05:25462983..25463002 (20 bp)
TTGCTGTGCCTGTGCGTTGTAAAGT
NONE
OsAffx.12902.1.S1_at--918--3871Chr03:9900872..9900896 (25 bp)
CTGTGCCTGTGCGTTGTAAAGTTTG
LOC_Os03g17820
OsAffx.12902.1.S1_at--147--6631Chr03:9900860..9900884 (25 bp)
GTTGTAAAGTTTGCACGAGGCCAGC
LOC_Os03g17820
OsAffx.12902.1.S1_at--749--2831Chr03:9900856..9900878 (23 bp)
AAGTTTGCACGAGGCCAGCATGGAC
LOC_Os03g17820
OsAffx.12902.1.S1_at--1107--5351Chr03:9900175..9900199 (25 bp)
GAAGAGCTGCAATGAAGTGTTGTTT
LOC_Os03g17820
OsAffx.12902.1.S1_at--423--5331Chr03:9900162..9900186 (25 bp)
GAAGTGTTGTTTTATGCCTGCGGTC
LOC_Os03g17820
OsAffx.12902.1.S1_at--1046--8771Chr03:9900155..9900179 (25 bp)
TGTTTTATGCCTGCGGTCTACAAAT
LOC_Os03g17820
OsAffx.12902.1.S1_at--835--7791Chr03:9900141..9900165 (25 bp)
GGTCTACAAATATTGCCCACTTCGG
LOC_Os03g17820
OsAffx.12902.1.S1_at--320--2191Chr03:9900136..9900160 (25 bp)
ACAAATATTGCCCACTTCGGTTAAT
LOC_Os03g17820
OsAffx.12902.1.S1_at--907--10171Chr03:9900131..9900155 (25 bp)
TATTGCCCACTTCGGTTAATTCCCT
LOC_Os03g17820
Target Sequence 
TGTTGATAAAGATTGCTGTGCCTGTGCGTTGTAAAGTTTGCACGAGGCCAGCATGGACAGCAAGAAGAGCTGCAATGAAG
TGTTGTTTTATGCCTGCGGTCTACAAATATTGCCCACTTCGGTTAATTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis