Browse Element(s) Details


Os.50752.1.S1_at

Description gb:AK058301.1
DB_XREF= gi:32968319
TID=Os.50752.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F12, full insert sequence.
FL= gb:AK058301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g178401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50752.1.S1_at--119--31Chr03:9919076..9919100 (25 bp)
ATTGGAGTTCCTCTCAGGATGTGTT
LOC_Os03g17840
Os.50752.1.S1_at--311--2251Chr03:9919113..9919137 (25 bp)
AAATTAGTTTCTACTTCGTGCTACA
NONE
Os.50752.1.S1_at--689--2491Chr03:9919146..9919170 (25 bp)
AACAGTACTCGAGTTCAATGGCATT
NONE
Os.50752.1.S1_at--796--3271Chr03:9919175..9919199 (25 bp)
CAAAGCCAGAGTTTTGCCTGAAGAA
NONE
Os.50752.1.S1_at--263--5431Chr03:9919204..9919228 (25 bp)
GAACCACATTGTTCGGTGCCAGTAA
NONE
Os.50752.1.S1_at--732--10611Chr03:9919215..9919239 (25 bp)
TTCGGTGCCAGTAACAGCGTTTCAA
NONE
Os.50752.1.S1_at--43--8811Chr03:9919250..9919274 (25 bp)
TGTTGCCCTTTTCTGGTCCATATGA
NONE
Os.50752.1.S1_at--120--6491Chr03:9919273..9919297 (25 bp)
GATAGAGGCTCTGTTTGACATTTCA
NONE
Os.50752.1.S1_at--545--6851Chr03:9919285..9919309 (25 bp)
GTTTGACATTTCATTACACCTTGGG
NONE
Os.50752.1.S1_at--96--7551Chr03:9919308..9919332 (25 bp)
GGGCCTTAATATACAGGGTCTGAAG
NONE
Os.50752.1.S1_at--822--10071Chr03:9919383..9919407 (25 bp)
TAGGATATCTTTGCTTGTTATCGGG
NONE
Target Sequence 
ATTGGAGTTCCTCTCAGGATGTGTTGCTTCATGAGGAAAATTAGTTTCTACTTCGTGCTACANCAATACTAACAGTACTC
GAGTTCAATGGCATTACTGCAAAGCCAGAGTTTTGCCTGAAGAAACTTGAACCACATTGTTCGGTGCCAGTAACAGCGTT
TCAAAGTGCACATATGTTGCCCTTTTCTGGTCCATATGATAGAGGCTCTGTTTGACATTTCATTACACCTTGGGGCCTTA
ATATACAGGGTCTGAAGGGACAAAAGATGTATGCACATACCTTGACGTGTGTAGAAATGTGATCTTTTAGGATATCTTTG
CTTGTTATCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis