Browse Element(s) Details


Os.51769.1.S1_at

Description gb:AK063663.1
DB_XREF= gi:32973681
TID=Os.51769.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C07, full insert sequence.
FL= gb:AK063663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1786010/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51769.1.S1_at--855--8991Chr03:9933388..9933412 (25 bp)
TGAAGTTCTGCGTTCCATGGTGCAA
LOC_Os03g17860
Os.51769.1.S1_at--1102--8571NONE
TGGTGCAAACACTGTAAGAACCTTG
NONE
Os.51769.1.S1_at--417--9771Chr03:9933259..9933283 (25 bp)
TAAGAACCTTGGAACACTTTGGGAG
LOC_Os03g17860
Os.51769.1.S1_at--641--7751Chr03:9933177..9933201 (25 bp)
GGTGTTAGCAAACCAGTATGCTCAA
LOC_Os03g17860
Os.51769.1.S1_at--614--2891Chr03:9933153..9933177 (25 bp)
AAGGTGGATATCCATTCGTACCCCA
LOC_Os03g17860
Os.51769.1.S1_at--1000--8071Chr03:9932080..9932104 (25 bp)
GGAGCTCAAGTGTTCCATCCTACCA
LOC_Os03g17860
Os.51769.1.S1_at--772--6691Chr03:9932069..9932093 (25 bp)
GTTCCATCCTACCACAGTTAAGCAA
LOC_Os03g17860
Os.51769.1.S1_at--278--10191Chr03:9932008..9932032 (25 bp)
TATAGTGAGCTTGTACTTCCTCCTG
LOC_Os03g17860
Os.51769.1.S1_at--15--9271Chr03:9931991..9932015 (25 bp)
TCCTCCTGGCGTTTAGTAGAATGTT
LOC_Os03g17860
Os.51769.1.S1_at--614--5271Chr03:9931973..9931997 (25 bp)
GAATGTTAACCACTGCATGAGTCGC
LOC_Os03g17860
Os.51769.1.S1_at--610--171Chr03:9931935..9931959 (25 bp)
ATTTTCTGCTTCATACTGCATTCAA
LOC_Os03g17860
Target Sequence 
TGAAGTTCTGCGTTCCATGGTGCAAACACTGTAAGAACCTTGGAACACTTTGGGAGGACTTGGGAAAGGTTATGGAAGGT
GCGGATGAAATAGAGATAGGGCAAGTGGACTGTGGTGTTAGCAAACCAGTATGCTCAAAGGTGGATATCCATTCGTACCC
CACATTCAAGGTGTTTTATGAAGGTGAAGAGGTTGCAAAATATAAAGGCCCAAGAAATGTGGAGTCACTGAAGAATTTTG
TTTCGGATGAAGCCGAGAAAGCTGGGGAAGCCAAGCTTCAGGACAGTTGAACTGGAGCTCAAGTGTTCCATCCTACCACA
GTTAAGCAACAATGTAGTACTGTTTGACATGCTTAAACTTTTTGATATAGTGAGCTTGTACTTCCTCCTGGCGTTTAGTA
GAATGTTAACCACTGCATGAGTCGCATGAAACTATGTAATTTTCTGCTTCATACTGCATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis