Browse Element(s) Details


OsAffx.25127.1.S1_at

Description tigr:9631.m01758
TID=OsAffx.25127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1789010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25127.1.S1_at--269--4711Chr03:9944470..9944494 (25 bp)
GCGGCGTTGCACTGAATGCGAGAAT
LOC_Os03g17890
OsAffx.25127.1.S1_at--822--3011Chr03:9944484..9944508 (25 bp)
AATGCGAGAATGCTTCTTCCTCGTC
LOC_Os03g17890
OsAffx.25127.1.S1_at--248--9571Chr03:9944498..9944522 (25 bp)
TCTTCCTCGTCGGTTATTCAGCATT
LOC_Os03g17890
OsAffx.25127.1.S1_at--1051--4011Chr03:9944505..9944529 (25 bp)
CGTCGGTTATTCAGCATTCGCATAT
LOC_Os03g17890
OsAffx.25127.1.S1_at--874--1531Chr03:9944517..9944541 (25 bp)
AGCATTCGCATATTCAGATATTCTG
LOC_Os03g17890
OsAffx.25127.1.S1_at--1124--1251Chr03:9944532..9944556 (25 bp)
AGATATTCTGATATTCCCCTGGTCG
LOC_Os03g17890
OsAffx.25127.1.S1_at--705--10211Chr03:9944543..9944564 (22 bp)
TATTCCCCTGGTCGACCACAAAAGG
LOC_Os03g17890
OsAffx.25127.1.S1_at--540--2291NONE
AAAGGTACTTACTCATTACTGTTGT
NONE
OsAffx.25127.1.S1_at--328--151Chr03:9944737..9944761 (25 bp)
ATTACTGTTGTATTGCGCGCCAGCG
LOC_Os03g17890
OsAffx.25127.1.S1_at--709--8771Chr03:9944745..9944769 (25 bp)
TGTATTGCGCGCCAGCGAATTCCGC
LOC_Os03g17890
OsAffx.25127.1.S1_at--1015--4571Chr03:9944759..9944783 (25 bp)
GCGAATTCCGCAAGGGTACCAAACT
LOC_Os03g17890
Target Sequence 
GCGGCGTTGCACTGAATGCGAGAATGCTTCTTCCTCGTCGGTTATTCAGCATTCGCATATTCAGATATTCTGATATTCCC
CTGGTCGACCACAAAAGGTACTTACTCATTACTGTTGTATTGCGCGCCAGCGAATTCCGCAAGGGTACCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis