Browse Element(s) Details


Os.15938.1.S1_at

Description gb:AK070872.1
DB_XREF= gi:32980895
TID=Os.15938.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071K01, full insert sequence.
FL= gb:AK070872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g177905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15938.1.S1_at--34--991Chr03:9879366..9879390 (25 bp)
AGGAGAGAGAGCCTTCTGCCTGACA
NONE
Os.15938.1.S1_at--403--5871Chr03:9879358..9879382 (25 bp)
GAGCCTTCTGCCTGACAAGAAATTC
NONE
Os.15938.1.S1_at--557--8551Chr03:9879300..9879324 (25 bp)
TGGAGGTGCTCCTAGCCATCTTCCT
LOC_Os03g17790
Os.15938.1.S1_at--1035--7131Chr03:9879263..9879286 (24 bp)
GTCTTCCTGCGCTACGGCTTGGGTA
LOC_Os03g17790
Os.15938.1.S1_at--278--3951Chr03:9879124..9879272 (25 bp)
CGGCTTGGGTATTGAGTTCTGGATC
LOC_Os03g17790
Os.15938.1.S1_at--585--1231Chr03:9879110..9879134 (25 bp)
AGTTCTGGATCGATCTCTTGCTGAC
LOC_Os03g17790
Os.15938.1.S1_at--656--451Chr03:9879098..9879122 (25 bp)
ATCTCTTGCTGACCATACTGGGATA
LOC_Os03g17790
Os.15938.1.S1_at--901--511Chr03:9878997..9879021 (25 bp)
ATCGAGCGATCGTGCAACGGTGCAA
NONE
Os.15938.1.S1_at--793--5191Chr03:9878976..9879000 (25 bp)
GCAATAGCAACTGATGCTGTGCTGT
NONE
Os.15938.1.S1_at--333--3891Chr03:9878960..9878984 (25 bp)
CTGTGCTGTGGTGTTAAGAGTACAT
NONE
Os.15938.1.S1_at--651--731Chr03:9878838..9878862 (25 bp)
ATGTTGCTTGTTTCTCTTATCTAAG
NONE
Target Sequence 
AGGAGAGAGAGCCTTCTGCCTGACAAGAAATTCTGAGAAGAGGGAGAATGGCGTCGGCGACGTTCCTGGAGGTGCTCCTA
GCCATCTTCCTGCCGCCGGTCGGCGTCTTCCTGCGCTACGGCTTGGGTATTGAGTTCTGGATCGATCTCTTGCTGACCAT
ACTGGGATACATCCCGGGGATCATCTACGCGGTGTATGTGCTGGTGGCCTGATCGAAAGAGTTCGAGCAGAGCCAGCGTC
GGGTGATCGAGCGATCGTGCAACGGTGCAATAGCAACTGATGCTGTGCTGTGGTGTTAAGAGTACATTTGTATGTGTGAA
AATGTGATTTATGCGATGAGATTAGGGTCTTGACGTCTTGTGATGAGAGTCTTTATGCTATTTTAGAGACTGTAATTGGG
TGTCATGTTGCTTGTTTCTCTTATCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis