Browse Element(s) Details


OsAffx.12901.1.S1_at

Description tigr:9631.m01744
TID=OsAffx.12901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1775011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12901.1.S1_at--1104--2831Chr03:9856375..9856399 (25 bp)
GAAGTAACGTGCATGGCAAGGGTAA
LOC_Os03g17750
OsAffx.12901.1.S1_at--813--7831Chr03:9856355..9856379 (25 bp)
GGTAAGGGTGAAGACATATCCAATC
LOC_Os03g17750
OsAffx.12901.1.S1_at--933--3191Chr03:9856308..9856332 (25 bp)
CAATGGTGGCCAGAACAGTGGTTCT
LOC_Os03g17750
OsAffx.12901.1.S1_at--858--5491Chr03:9856296..9856320 (25 bp)
GAACAGTGGTTCTATTTTCAGAGAA
LOC_Os03g17750
OsAffx.12901.1.S1_at--955--10571Chr03:9856218..9856286 (25 bp)
TTCTACTCCATCTACCCAGAGTATG
LOC_Os03g17750
OsAffx.12901.1.S1_at--469--8871Chr03:9856195..9856219 (25 bp)
TGATGGATTAGCACAGGACACAACT
LOC_Os03g17750
OsAffx.12901.1.S1_at--294--8671Chr03:9856171..9856195 (25 bp)
TGTGGTGGAGTCAGTCCAGTCCCAG
LOC_Os03g17750
OsAffx.12901.1.S1_at--780--3431Chr03:9856155..9856179 (25 bp)
CAGTCCCAGGACAGTTTAGCTCTAA
LOC_Os03g17750
OsAffx.12901.1.S1_at--1143--4831Chr03:9856129..9856153 (25 bp)
GCTACATGTTGTTCCAGAGGCGTTA
LOC_Os03g17750
OsAffx.12901.1.S1_at--20--1051Chr03:9856114..9856138 (25 bp)
AGAGGCGTTAATAGCCCCAACCAGA
LOC_Os03g17750
OsAffx.12901.1.S1_at--822--10491Chr03:9856107..9856131 (25 bp)
TTAATAGCCCCAACCAGACAGATCA
LOC_Os03g17750
Target Sequence 
GAAGTAACGTGCATGGCAAGGGTAAGGGTGAAGACATATCCAATCTTAAGGATGGTTCTATAATGGACAATGGTGGCCAG
AACAGTGGTTCTATTTTCAGAGAAAGGGGCTTCTTCTACTCCATCTACCCAGAGTATGATGGATTAGCACAGGACACAAC
TGTGGTGGAGTCAGTCCAGTCCCAGGACAGTTTAGCTCTAAAGCTACATGTTGTTCCAGAGGCGTTAATAGCCCCAACCA
GACAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis