Browse Element(s) Details


Os.8079.1.S1_at

Description gb:AK073348.1
DB_XREF= gi:32983371
TID=Os.8079.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025D08, full insert sequence.
FL= gb:AK073348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1771011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8079.1.S1_at--606--5771Chr03:9832367..9832391 (25 bp)
GAGCGCAACCCCAGCCCGAATGGTA
LOC_Os03g17710
Os.8079.1.S1_at--240--1651Chr03:9832355..9832379 (25 bp)
AGCCCGAATGGTAGGCGGAGTCCAA
LOC_Os03g17710
Os.8079.1.S1_at--993--1131Chr03:9832328..9832352 (25 bp)
AGTCCACAGGATCGGGTAAGCCCAC
LOC_Os03g17710
Os.8079.1.S1_at--712--691Chr03:9832288..9832312 (25 bp)
ATGAGCGCAATGGTGACAGCCCCTG
LOC_Os03g17710
Os.8079.1.S1_at--201--9691Chr03:9832079..9832103 (25 bp)
TCACGCTCGCCCAGAGCAAGCGAGT
LOC_Os03g17710
Os.8079.1.S1_at--1119--171Chr03:9832039..9832063 (25 bp)
ATTTAATCCCAGTCTCTGGCGTTCA
LOC_Os03g17710
Os.8079.1.S1_at--809--1151Chr03:9832029..9832053 (25 bp)
AGTCTCTGGCGTTCATCTTGTGGAT
LOC_Os03g17710
Os.8079.1.S1_at--780--8351Chr03:9832022..9832046 (25 bp)
GGCGTTCATCTTGTGGATGGTCATG
LOC_Os03g17710
Os.8079.1.S1_at--522--671Chr03:9831882..9831906 (25 bp)
ATGAACTTTCTATTAGCCTGCATTG
LOC_Os03g17710
Os.8079.1.S1_at--1110--9971Chr03:9831869..9831893 (25 bp)
TAGCCTGCATTGTTTTTGCGGTCTG
LOC_Os03g17710
Os.8079.1.S1_at--767--9051Chr03:9831864..9831888 (25 bp)
TGCATTGTTTTTGCGGTCTGGTATC
LOC_Os03g17710
Target Sequence 
GAGCGCAACCCCAGCCCGAATGGTAGGCGGAGTCCAAGGAGTCCACAGGATCGGGTAAGCCCACCACCCAAGGATAATGA
TGAGCGCAATGGTGACAGCCCCTGGGGCAGGGAGAACAGCAGGAGCCCATCTGACGGCTACCGTAGCCCTGTGGCTGCCA
ATGGGCGCAGCCCAAGCCCAAGGAACAATGGAAGCCCTAGTCCAATGGACAACAATAGCCGAAGCCCAAGGGACAACGGC
AGCCCGAGCCCTAGGGATGGAAATGGTGATGGTGGTAGCCGTGGCGGCTCACGCTCGCCCAGAGCAAGCGAGTCCCCTGA
AGCTTGAAATTTAATCCCAGTCTCTGGCGTTCATCTTGTGGATGGTCATGCTATGGTTGTAATAGTTATATTTCCGGTTT
AAGACGAGATCAAGGNAGTCTTAACACCTGAAAGGATTTGGTGCCCTTGGGGCTATGCTATATTGCTATTGGTGTGTAAT
GGATCGATGAACTTTCTATTAGCCTGCATTGTTTTTGCGGTCTGGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis