Browse Element(s) Details


Os.406.1.S1_a_at

Description gb:AF332873.1
DB_XREF= gi:12698875
TID=Os.406.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.406 (NCBI UniGene Cluster)
DEF=Oryza sativa MAP kinase BIMK1 mRNA, complete cds.
PROD=MAP kinase BIMK1
FL= gb:AK067339.1 gb:AK104834.1 gb:AF332873.1 gb:AF216315.1 gb:AF479883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1770011/11Mitogen-activated protein kinase homolog 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000169biological_processactivation of MAPK activity during osmolarity sensing
GO:0000302biological_processresponse to reactive oxygen species
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0006979biological_processresponse to oxidative stress
GO:0007165biological_processsignal transduction
GO:0009607biological_processresponse to biotic stimulus
GO:0009723biological_processresponse to ethylene stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009868biological_processjasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200biological_processresponse to chitin
GO:0016310biological_processphosphorylation
GO:0042830biological_processdefense response to pathogenic bacteria
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004707molecular_functionMAP kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.406.1.S1_a_at--320--8271Chr03:9827950..9827974 (25 bp)
GGCAGGGACCACATGCACCAGATGC
LOC_Os03g17700
Os.406.1.S1_a_at--937--1291Chr03:9827932..9827955 (24 bp)
AGATGCGCCTCATCACCGAGGTGAT
LOC_Os03g17700
Os.406.1.S1_a_at--890--8191Chr03:9827772..9827796 (25 bp)
GGAAGTACATGAGGCACCTGCCGCA
LOC_Os03g17700
Os.406.1.S1_a_at--845--9711Chr03:9827668..9827691 (24 bp)
TCAACCCGCTGCAGAGAATCACAGT
LOC_Os03g17700
Os.406.1.S1_a_at--598--3311Chr03:9827118..9827140 (23 bp)
CACAGTTGAGGAGGCGCTCGATCAT
LOC_Os03g17700
Os.406.1.S1_a_at--843--4791Chr03:9827103..9827127 (25 bp)
GCTCGATCATCCTTACCTAGAGAGA
LOC_Os03g17700
Os.406.1.S1_a_at--549--6051Chr03:9827082..9827106 (25 bp)
GAGATTGCACGACATCGCCGATGAG
LOC_Os03g17700
Os.406.1.S1_a_at--37--2291Chr03:9826925..9826949 (25 bp)
AAATGAGATCCCGTCTATACCTGCT
LOC_Os03g17700
Os.406.1.S1_a_at--783--5871Chr03:9826878..9826902 (25 bp)
GAGCCGGGTAGACTGAACATTGCAT
LOC_Os03g17700
Os.406.1.S1_a_at--125--8871Chr03:9826841..9826865 (25 bp)
TGATGTTCGAAACCCACATTCTCTG
LOC_Os03g17700
Os.406.1.S1_a_at--846--111Chr03:9826824..9826848 (25 bp)
ATTCTCTGCAAGTTGTGGCTGCTTT
LOC_Os03g17700
Target Sequence 
GGCAGGGACCACATGCACCAGATGCGCCTCATCACCGAGGTGATCGGGACGCCGACGGACGACGAGCTGGGGTTCATACG
GAACGAGGACGCGAGGAAGTACATGAGGCACCTGCCGCAGTACCCGCGCCGGACGTTCGCGAGCATGTTCCCGCGGGTGC
AGCCCGCCGCGCTCGACCTCATCGAGAGGATGCTCACCTTCAACCCGCTGCAGAGAATCACAGTTGAGGAGGCGCTCGAT
CATCCTTACCTAGAGAGATTGCACGACATCGCCGATGAGCCCATCTGCCTGGAGCCCTTCTCCTTCGACTTCGAGCAGAA
GGCTCTAAACGAGGACCAAATGAAGCAGCTGATCTTCAACGAAGCGATCGAGATGAACCCAAACATCCGGTACTAGATTG
AATCACCATGGAAATGAGATCCCGTCTATACCTGCTTTGTACATATGATCAAGATTGAGAGCCGGGTAGACTGAACATTG
CATTTGTTTGTTTGTTGATGTTCGAAACCCACATTCTCTGCAAGTTGTGGCTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.406.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis