Browse Element(s) Details


OsAffx.25125.1.S1_at

Description tigr:9631.m01741
TID=OsAffx.25125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1772011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25125.1.S1_at--1036--3651Chr03:9839536..9839560 (25 bp)
CTTCACCCCGCTGTTGTGGTGTCGT
LOC_Os03g17720
OsAffx.25125.1.S1_at--31--8811Chr03:9839547..9839571 (25 bp)
TGTTGTGGTGTCGTTCCCTCACCAC
LOC_Os03g17720
OsAffx.25125.1.S1_at--281--1151Chr03:9839615..9839639 (25 bp)
AGTCCCCAGTCCACTAGCAGCGGAA
LOC_Os03g17720
OsAffx.25125.1.S1_at--241--4351Chr03:9839620..9839644 (25 bp)
CCAGTCCACTAGCAGCGGAAGCCTG
LOC_Os03g17720
OsAffx.25125.1.S1_at--420--4691Chr03:9839634..9839658 (25 bp)
GCGGAAGCCTGGATGTCGAGGGCAT
LOC_Os03g17720
OsAffx.25125.1.S1_at--609--871Chr03:9839657..9839681 (25 bp)
ATGGCGCTGGCTGACTACTTCTTCG
LOC_Os03g17720
OsAffx.25125.1.S1_at--702--1831Chr03:9839741..9839765 (25 bp)
ACGCTGCCAACTAAGAAGGAGGCCA
LOC_Os03g17720
OsAffx.25125.1.S1_at--803--4331Chr03:9839763..9839787 (25 bp)
CCAGGGAGACGATGCCGACGGTGGA
LOC_Os03g17720
OsAffx.25125.1.S1_at--152--3272Chr03:9839820..9839844 (25 bp)
CAACTGCCTCAACCGTCTGTCGTGA
LOC_Os03g17720
OsAffx.25125.1.S1_at--582--9711Chr03:9839828..9839852 (25 bp)
TCAACCGTCTGTCGTGAGGACTACG
LOC_Os03g17720
OsAffx.25125.1.S1_at--714--9471Chr03:9839835..9839859 (25 bp)
TCTGTCGTGAGGACTACGCCGTTGG
LOC_Os03g17720
Target Sequence 
CTTCACCCCGCTGTTGTGGTGTCGTTCCCTCACCACCGCCGCACTATGCTTCGGCCGCCGTCGTCAATCCTTCGCCATCA
GTCCCCAGTCCACTAGCAGCGGAAGCCTGGATGTCGAGGGCATGGCGCTGGCTGACTACTTCTTCGGCCCCGAGTTGGAC
GACTTGATGCAGTGGCTGGGCGACGGCGACGTCGGCCGGAAGGGCACGCTGCCAACTAAGAAGGAGGCCAGGGAGACGAT
GCCGACGGTGGAGGTGACCGCCGGCCACTCCGCATCCGCCTTCGCAACTGCCTCAACCGTCTGTCGTGAGGACTACGCCG
TTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis