Browse Element(s) Details


Os.14770.1.S1_at

Description gb:AK060649.1
DB_XREF= gi:32970667
TID=Os.14770.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H01, full insert sequence.
FL= gb:AK060649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1776011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14770.1.S1_at--204--1191Chr03:9857991..9858015 (25 bp)
AGTACCACTACCATGGCGCGCAGGG
LOC_Os03g17760
Os.14770.1.S1_at--672--7771Chr03:9857393..9857417 (25 bp)
GGTGCTCTGGCGATTAACAAGCTGC
LOC_Os03g17760
Os.14770.1.S1_at--874--3311Chr03:9857369..9857393 (25 bp)
CACATGAAGGGTTCGTCCGGTTGTC
LOC_Os03g17760
Os.14770.1.S1_at--491--9271Chr03:9857354..9857378 (25 bp)
TCCGGTTGTCGGACTAGGCTGCCTA
LOC_Os03g17760
Os.14770.1.S1_at--918--10091Chr03:9857340..9857364 (25 bp)
TAGGCTGCCTATTCGATTCGTTTAA
LOC_Os03g17760
Os.14770.1.S1_at--108--9391Chr03:9857323..9857347 (25 bp)
TCGTTTAATTCGCTCTAACTCGTGC
LOC_Os03g17760
Os.14770.1.S1_at--1133--4571Chr03:9857288..9857312 (25 bp)
GCGCACGCCCATCAAAAATCTGTAA
LOC_Os03g17760
Os.14770.1.S1_at--419--5571Chr03:9857260..9857284 (25 bp)
GAAAGATTCAATTCGTCTCTCGTTT
LOC_Os03g17760
Os.14770.1.S1_at--140--7171Chr03:9857246..9857270 (25 bp)
GTCTCTCGTTTACCAGCGTATTTTT
LOC_Os03g17760
Os.14770.1.S1_at--106--4191Chr03:9857210..9857234 (25 bp)
CCCTTCTTTTTCCAAGTGTCTGTAG
LOC_Os03g17760
Os.14770.1.S1_at--471--2871Chr03:9857197..9857221 (25 bp)
AAGTGTCTGTAGTCCAGTCGCTGCA
LOC_Os03g17760
Target Sequence 
AGTACCACTACCATGGCGCGCAGGGCCTGGGCGTCCCCGCCGCCCACTTCTTCCCGCCGGTCNCNGCCGCANCCNGTCAC
CACCGTGCCCGCCATCATCTCCAAGCCCACCGTCANTGGCCCCTCCCAAAGTGGAGCAGGTGACGGGATGCAGTTGAAGG
GGCACGGCGACAGTGCGAGGAATTAAGAGGAGGCCAAAGGTGCTCTGGCGATTAACAAGCTGCACATGAAGGGTTCGTCC
GGTTGTCGGACTAGGCTGCCTATTCGATTCGTTTAATTCGCTCTAACTCGTGCGTCCATGGGGGCGCACGCCCATCAAAA
ATCTGTAACAAGAAAGATTCAATTCGTCTCTCGTTTACCAGCGTATTTTTCAATGGTAAACCCCTTCTTTTTCCAAGTGT
CTGTAGTCCAGTCGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis