Browse Element(s) Details


OsAffx.3261.1.S1_at

Description tigr:9631.m01735
TID=OsAffx.3261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1766011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17610Os.53537.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610OsAffx.12900.1.S1_x_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610Os.52906.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3261.1.S1_at--581--3291Chr03:9802303..9802324 (22 bp)
CAAAGATATGATCTGCGTAGTGGAT
LOC_Os03g17660
OsAffx.3261.1.S1_at--903--711Chr03:9802307..9802331 (25 bp)
ATGATCTGCGTAGTGGATCACTCAA
LOC_Os03g17660
OsAffx.3261.1.S1_at--638--471Chr03:9802310..9802334 (25 bp)
ATCTGCGTAGTGGATCACTCAAGCC
LOC_Os03g17660
OsAffx.3261.1.S1_at--802--6931Chr03:9802316..9802340 (25 bp)
GTAGTGGATCACTCAAGCCGGGTAA
LOC_Os03g17660
OsAffx.3261.1.S1_at--134--10071Chr03:9802317..9802341 (25 bp)
TAGTGGATCACTCAAGCCGGGTAAT
LOC_Os03g17660
OsAffx.3261.1.S1_at--1160--1091Chr03:9802318..9802342 (25 bp)
AGTGGATCACTCAAGCCGGGTAATC
LOC_Os03g17660
OsAffx.3261.1.S1_at--465--8571Chr03:9802320..9802344 (25 bp)
TGGATCACTCAAGCCGGGTAATCCA
LOC_Os03g17660
OsAffx.3261.1.S1_at--1050--1951Chr03:9802326..9802350 (25 bp)
ACTCAAGCCGGGTAATCCAAGCACC
LOC_Os03g17660
OsAffx.3261.1.S1_at--258--2671Chr03:9802330..9802354 (25 bp)
AAGCCGGGTAATCCAAGCACCCGAT
LOC_Os03g17660
OsAffx.3261.1.S1_at--69--7691Chr03:9802335..9802359 (25 bp)
GGGTAATCCAAGCACCCGATTCATT
LOC_Os03g17660
OsAffx.3261.1.S1_at--465--7831Chr03:9802336..9802360 (25 bp)
GGTAATCCAAGCACCCGATTCATTT
LOC_Os03g17660
Target Sequence 
CAAAGATATGATCTGCGTAGTGGATCACTCAAGCCGGGTAATCCAAGCACCCGATTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis