Browse Element(s) Details


Os.52906.1.S1_at

Description gb:AK069841.1
DB_XREF= gi:32979865
TID=Os.52906.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031G23, full insert sequence.
FL= gb:AK069841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1761011/11DNA topoisomerase VIA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17580Os.2244.1.S1_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17580Os.2244.1.S1_s_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17590Os.50465.1.S1_x_at11/113+9762837..9767872HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600Os.29051.1.S1_at10/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.1.S1_x_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.2.S1_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17610Os.53537.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610OsAffx.12900.1.S1_x_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610Os.52906.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0009957biological_processepidermal cell fate specification
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52906.1.S1_at--1130--3471Chr03:9774809..9774833 (25 bp)
CAGGCAATTTGACCGCAGCAGACAT
LOC_Os03g17610
Os.52906.1.S1_at--866--1131Chr03:9774838..9774862 (25 bp)
AGTGCGACTGCCTTCGTCATAGTGA
LOC_Os03g17610
Os.52906.1.S1_at--730--7131Chr03:9774853..9774877 (25 bp)
GTCATAGTGATGATCTTCCTGGTCA
LOC_Os03g17610
Os.52906.1.S1_at--1023--6851Chr03:9774886..9774910 (25 bp)
GTTTGTTTGATGACAGACGCCTTGA
LOC_Os03g17610
Os.52906.1.S1_at--141--151Chr03:9774914..9774938 (25 bp)
ATTACTGGATTCGTTCTGCCAAGGA
LOC_Os03g17610
Os.52906.1.S1_at--916--7271Chr03:9775120..9775144 (25 bp)
GTGCCAACTCAGTACGCAGATCAGA
LOC_Os03g17610
Os.52906.1.S1_at--632--71Chr03:9775147..9775171 (25 bp)
ATTGCTGTCTGAGTTCTATACGCCG
LOC_Os03g17610
Os.52906.1.S1_at--656--8431Chr03:9775200..9775224 (25 bp)
GGCCATTAATTTCCTGGGTGTTATA
LOC_Os03g17610
Os.52906.1.S1_at--491--7351Chr03:9775235..9775259 (25 bp)
GTGAACCCACTCTACCTAAGTATTT
LOC_Os03g17610
Os.52906.1.S1_at--605--8751Chr03:9775318..9775342 (25 bp)
TGTACTCTTTATTGTCTCGTCCGAA
LOC_Os03g17610
Os.52906.1.S1_at--69--2431Chr03:9775367..9775391 (25 bp)
AAAACAGTACGTGGCCATCGTGCCT
LOC_Os03g17610
Target Sequence 
CAGGCAATTTGACCGCAGCAGACATCGAGAGTGCGACTGCCTTCGTCATAGTGATGATCTTCCTGGTCAATTTATTAGTT
TGTTTGATGACAGACGCCTTGAATAATTACTGGATTCGTTCTGCCAAGGAAGAAGAAGCATCACCACCAGCTGGTCATGT
ACGAGGAAATGTTGCTGCTGTGAAGGCAGCGCAGATCGTGCCAACTCAGTACGCAGATCAGAGGATTGCTGTCTGAGTTC
TATACGCCGGCTAGTGTAGAAGTTTGGCCACTGCATTGGCCATTAATTTCCTGGGTGTTATATATGTGTCATGTGAACCC
ACTCTACCTAAGTATTTACAGCTAGATATATAGCTTGATCTGGCTAAATTGGCTCAGTGGCCAATTAATTAAGTGTGTAC
TCTTTATTGTCTCGTCCGAACACAACTACTTGTATGTCCAGTTGAAAACAGTACGTGGCCATCGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis