Browse Element(s) Details


Os.52224.1.S1_at

Description gb:AK068146.1
DB_XREF= gi:32978164
TID=Os.52224.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135M09, full insert sequence.
FL= gb:AK065726.1 gb:AK068146.1 gb:AK060735.1 gb:AK099067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1763411/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17580Os.2244.1.S1_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17580Os.2244.1.S1_s_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17590Os.50465.1.S1_x_at11/113+9762837..9767872HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600Os.29051.1.S1_at10/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.1.S1_x_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.2.S1_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17610Os.53537.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610OsAffx.12900.1.S1_x_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610Os.52906.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52224.1.S1_at--716--2511Chr03:9778739..9778763 (25 bp)
AACATTTTTCCAGGAGACCGCAGGG
LOC_Os03g17634
Os.52224.1.S1_at--372--2331Chr03:9778708..9778732 (25 bp)
AAAGATCCCGATCAACTCTCTGAAT
LOC_Os03g17634
Os.52224.1.S1_at--902--1231Chr03:9778643..9778667 (25 bp)
AGTTCCTCAACCTTTTGCAGAGTCA
LOC_Os03g17634
Os.52224.1.S1_at--9--8351Chr03:9778582..9778606 (25 bp)
GGCTGGTGCTACTCAGTGACATCAA
LOC_Os03g17634
Os.52224.1.S1_at--967--8111Chr03:9778527..9778551 (25 bp)
GGACGGCCATCCAGATACGGTAAAA
LOC_Os03g17634
Os.52224.1.S1_at--630--10591Chr03:9778477..9778501 (25 bp)
TTGCTGGAAACTTGCAATCCCCGCA
LOC_Os03g17634
Os.52224.1.S1_at--830--3031Chr03:9778462..9778486 (25 bp)
AATCCCCGCAATTCCATGGAAACTG
LOC_Os03g17634
Os.52224.1.S1_at--135--8571Chr03:9778395..9778419 (25 bp)
TGGATTTTGAGCACCATTGCCTAAT
LOC_Os03g17634
Os.52224.1.S1_at--859--7271Chr03:9778314..9778338 (25 bp)
GTCCAAGATGCCCATGGCTGTATTG
LOC_Os03g17634
Os.52224.1.S1_at--810--4731Chr03:9778298..9778322 (25 bp)
GCTGTATTGTTGTGCCTCTTAAAAA
LOC_Os03g17634
Os.52224.1.S1_at--733--2091Chr03:9778274..9778298 (25 bp)
ACATGCCATGATGTGCTCAGTTACA
LOC_Os03g17634
Target Sequence 
AACATTTTTCCAGGAGACCGCAGGGGATGATAAAGATCCCGATCAACTCTCTGAATCATTGGTTGAAGAGGAAAGCTGTG
AGGACTGTGCAGTGACAGTTCCTCAACCTTTTGCAGAGTCATCCTAAGATAAGGTAGTGTATACAGATGTACAGGTTGGC
TGGTGCTACTCAGTGACATCAACCCAACACGGTTTCACAAGAAGGAATTTGTGGACGGCCATCCAGATACGGTAAAACAT
CAGAATTAAAGTTATTAGGTTATTGCTGGAAACTTGCAATCCCCGCAATTCCATGGAAACTGAAAAACATGCTGACCGAG
TACAGTGAAATACTCCACTGTCTGTGGATTTTGAGCACCATTGCCTAATATAGATTTGTAACAAGTTTGTTCGCTCAAGA
TTTGAAACCTGATTGCAAAACAAATGTCCAAGATGCCCATGGCTGTATTGTTGTGCCTCTTAAAAACATGCCATGATGTG
CTCAGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis