Browse Element(s) Details


Os.15770.1.S1_x_at

Description gb:AK110523.1
DB_XREF= gi:32995732
TID=Os.15770.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H06, full insert sequence.
FL= gb:AK110523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3572011/11expressed protein
LOC_Os03g176001/11UPF0308 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15770.1.S1_x_at--1062--2571Chr07:21390850..21390874 (25 bp)
AACGACGTACAGTGTGATTCTTCAT
LOC_Os07g35720
Os.15770.1.S1_x_at--818--7011Chr07:21390784..21390808 (25 bp)
GTACTTTGGCATTCTCTGATGTCAT
LOC_Os07g35720
Os.15770.1.S1_x_at--672--10431Chr07:21390652..21390676 (25 bp)
TTATGCTACATCTGGGCGTGCGTAC
LOC_Os07g35720
Os.15770.1.S1_x_at--267--9151Chr07:21390634..21390658 (25 bp)
TGCGTACTATTCCTCAATGCCATAT
LOC_Os07g35720
Os.15770.1.S1_x_at--787--6231Chr07:21390600..21390624 (25 bp)
GATGGACCAAGAAAGCTCGTGACTC
LOC_Os07g35720
Os.15770.1.S1_x_at--78--2171Chr07:21390566..21390590 (25 bp)
ACACCTTGGGACCTTTCCAGATGAT
LOC_Os07g35720
Os.15770.1.S1_x_at--953--8891Chr07:21390446..21390470 (25 bp)
TGAGATTCTTCTTCGTTATCTTGGG
LOC_Os07g35720
Os.15770.1.S1_x_at--908--6171Chr07:21390412..21390436 (25 bp)
GAGGAGATTGCCAAAGCCGCTTCCA
LOC_Os07g35720
Os.15770.1.S1_x_at--491--2671Chr07:21390399..21390423 (25 bp)
AAGCCGCTTCCAAGATGTCTGGTGC
LOC_Os07g35720
Os.15770.1.S1_x_at--581--9111Chr07:21390377..21390401 (25 bp)
TGCTGCGGCCAGTTTTCATTTCATT
LOC_Os07g35720
Os.15770.1.S1_x_at--931--3032Chr03:9768732..9768851 (25 bp)
AATCCATGCAACTGTACCTTTCGAG
LOC_Os03g17600
Target Sequence 
AACGACGTACAGTGTGATTCTTCATAACACATGTCAGAGTTAAACGTGCGAGTGTGGTTTGAGTGAGTACTTTGGCATTC
TCTGATGTCATGCGATAAGTGTTATGCTACATCTGGGCGTGCGTACTATTCCTCAATGCCATATTAATGATGCGATGGAC
CAAGAAAGCTCGTGACTCTATCCCAGCACACCTTGGGACCTTTCCAGATGATGTTGGGATGGCCCAGGCAAGAGTATTCA
GGCATAATGTTTTGCAAAGCACTGCGAATGAGATAGTTAGGCTCGGTGATCAGGATAACCAATCTTTTGAGATTCTTCTT
CGTTATCTTGGGGAAGCAAAGGAGGAGATTGCCAAAGCCGCTTCCAAGATGTCTGGTGCTGCGGCCAGTTTTCATTTCAT
TTCATTTCAGATGTTTTCATTTCAGATGTTTCAGTCTCTTAATGGAATCCATGCAACTGTACCTTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15770.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis