Browse Element(s) Details


Os.15770.2.S1_at

Description gb:AK064568.1
DB_XREF= gi:32974586
TID=Os.15770.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D06, full insert sequence.
FL= gb:AK064568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3572011/11expressed protein
LOC_Os03g176001/11UPF0308 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15770.2.S1_at--351--3591Chr07:21390248..21390272 (25 bp)
CATTAATTTCTGTAGCTTTCGAGCT
LOC_Os07g35720
Os.15770.2.S1_at--899--6652Chr03:9768868..9768892 (25 bp)
GTTGAACTCTTTTTCGTCCATCTAA
LOC_Os03g17600
Os.15770.2.S1_at--174--6831Chr07:21390178..21390202 (25 bp)
GTTTAACCACTTACATCCAGGATGC
LOC_Os07g35720
Os.15770.2.S1_at--1063--1051Chr07:21390055..21390079 (25 bp)
AGGGTTATCACTACGCTTGCAAAAA
LOC_Os07g35720
Os.15770.2.S1_at--743--2411Chr07:21390035..21390059 (25 bp)
AAAAATGGCGTCTCCTATGCCACCA
LOC_Os07g35720
Os.15770.2.S1_at--163--10151Chr07:21390020..21390044 (25 bp)
TATGCCACCACTGACTCTGATGTGT
LOC_Os07g35720
Os.15770.2.S1_at--494--9471Chr07:21390005..21390029 (25 bp)
TCTGATGTGTTGTTGAACCCCTTTT
LOC_Os07g35720
Os.15770.2.S1_at--862--6331Chr07:21389947..21389971 (25 bp)
GATGCATCTCTTATTCATTGCCATG
LOC_Os07g35720
Os.15770.2.S1_at--1106--71Chr07:21389931..21389955 (25 bp)
ATTGCCATGGTAGTAGCCGTGTCTG
LOC_Os07g35720
Os.15770.2.S1_at--673--4251Chr07:21389915..21389939 (25 bp)
CCGTGTCTGGTGCTGTTGTTCTTCA
LOC_Os07g35720
Os.15770.2.S1_at--644--10791Chr07:21389900..21389924 (25 bp)
TTGTTCTTCATCTCTCTAGCAAAGT
LOC_Os07g35720
Target Sequence 
CATTAATTTCTGTAGCTTTCGAGCTTTTCATAATATTATGTTGAACTCTTTTTCGTCCATCTAATCTTTAGTTTAACCAC
TTACATCCAGGATGCAATTGAGGTTGCAGGGGTTGCTCTTGTTTTAATCGGACCAGGTACTGTTGAAAAAACAGTGGCAG
TGGCGGCGACGACGACGACGGCGAGGAAGAGAAAGGGTTATCACTACGCTTGCAAAAATGGCGTCTCCTATGCCACCACT
GACTCTGATGTGTTGTTGAACCCCTTTTTTTTTTTCTAGCTGATCTACAAAGTGTGCAGTACAGATGCATCTCTTATTCA
TTGCCATGGTAGTAGCCGTGTCTGGTGCTGTTGTTCTTCATCTCTCTAGCAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15770.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis