Browse Element(s) Details


Os.54268.1.S1_at

Description gb:AK102941.1
DB_XREF= gi:32988150
TID=Os.54268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114L08, full insert sequence.
FL= gb:AK102941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3574011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54268.1.S1_at--931--10331Chr07:21407225..21407249 (25 bp)
TTACAAACCGCATCGTTGGGACATT
LOC_Os07g35740
Os.54268.1.S1_at--582--2111Chr07:21407103..21407127 (25 bp)
ACATGTCTCCTGAGTACGTGACGCA
LOC_Os07g35740
Os.54268.1.S1_at--979--8931Chr07:21407085..21407109 (25 bp)
TGACGCATGGGCAGTACTCCACGAA
LOC_Os07g35740
Os.54268.1.S1_at--799--5491Chr07:21407003..21407027 (25 bp)
GAACAACGGGCCCTATTTCTTTGAG
LOC_Os07g35740
Os.54268.1.S1_at--781--6431Chr07:21406598..21406622 (25 bp)
GATCATAGATCACTCCTTGGGAAGA
LOC_Os07g35740
Os.54268.1.S1_at--698--10491Chr07:21406542..21406566 (25 bp)
TTAACATTGGTCTCCTGTGTGTCCA
LOC_Os07g35740
Os.54268.1.S1_at--39--1491Chr07:21406518..21406542 (25 bp)
AGCAGAACCCTATAGATCGTCCAAC
LOC_Os07g35740
Os.54268.1.S1_at--241--8411Chr07:21406442..21406466 (25 bp)
GGCCCCTGTAGTTCATATTCCAGTA
LOC_Os07g35740
Os.54268.1.S1_at--277--231Chr07:21406428..21406452 (25 bp)
ATATTCCAGTAGCATCTTTCTCCGA
LOC_Os07g35740
Os.54268.1.S1_at--490--5611Chr07:21406376..21406400 (25 bp)
GACACAATTGTCTCCCAGGTAGCAG
LOC_Os07g35740
Os.54268.1.S1_at--27--2351Chr07:21406346..21406370 (25 bp)
AAAGCAGAGCTTGCCATCGCTAGTG
LOC_Os07g35740
Target Sequence 
TTACAAACCGCATCGTTGGGACATTTGGGTACATGTCTCCTGAGTACGTGACGCATGGGCAGTACTCCACGAAATCAGAT
GTGTTCAGCTTCGGCATTCTCGTCATAGAGATCGTGACGGGCCGGAGAAGGAACAACGGGCCCTATTTCTTTGAGCCAAA
CGAAGATATAATAAGCATAGTATGGAGGCACTGGGCAGAGGGAAACATTAAGGAGATCATAGATCACTCCTTGGGAAGAA
ACTACCCTGAAGGCGAGGTGCTAAAATGTGTTAACATTGGTCTCCTGTGTGTCCAGCAGAACCCTATAGATCGTCCAACA
ATGGCCGATGTCATGGTTTTACTTAATAGCGATGCTACTAGCACTCTGCCGGCCCCTGTAGTTCATATTCCAGTAGCATC
TTTCTCCGATGGAAGCTCTGGTTATTCTCAAACCGTGACACAATTGTCTCCCAGGTAGCAGGGCCTAAAGCAGAGCTTGC
CATCGCTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis