Browse Element(s) Details


OsAffx.5555.1.S1_at

Description tigr:9635.m03662
TID=OsAffx.5555.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3577011/11serine/threonine kinase, putative
LOC_Os07g3698011/11protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed
LOC_Os07g35820NANA7+21446393..21446749hypothetical protein
LOC_Os07g35830NANA7+21450497..21451046NA

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5555.1.S1_at--469--4132Chr07:22139648..22139752 (25 bp)
CGCATTGCTGGGACATTCGGTTACA
LOC_Os07g36980
OsAffx.5555.1.S1_at--276--2312Chr07:22139533..22139557 (25 bp)
AAAGAAGGAACAGTGGGCCATATTT
LOC_Os07g36980
OsAffx.5555.1.S1_at--753--7552Chr07:22139519..22139543 (25 bp)
GGGCCATATTTCTCTGAGCAAAATG
LOC_Os07g36980
OsAffx.5555.1.S1_at--620--192Chr07:22139512..22139536 (25 bp)
ATTTCTCTGAGCAAAATGGTGTAGA
LOC_Os07g36980
OsAffx.5555.1.S1_at--324--8152Chr07:22139313..22139337 (25 bp)
GGACAACAGCAGAGATGATCGACCA
LOC_Os07g36980
OsAffx.5555.1.S1_at--738--6292Chr07:22139300..22139324 (25 bp)
GATGATCGACCATTCCTTGGGAAGA
LOC_Os07g36980
OsAffx.5555.1.S1_at--433--10832Chr07:22139284..22139308 (25 bp)
TTGGGAAGAAACTACAATGAGGCTG
LOC_Os07g36980
OsAffx.5555.1.S1_at--351--4752Chr07:22139263..22139287 (25 bp)
GCTGAGGTGGTAAAATGCATCAACA
LOC_Os07g36980
OsAffx.5555.1.S1_at--58--3012Chr07:22139250..22139274 (25 bp)
AATGCATCAACATCGGACTCCTATG
LOC_Os07g36980
OsAffx.5555.1.S1_at--928--8512Chr07:22139111..22139135 (25 bp)
TGGAAGCTCTGGTTACTCAACAGGT
LOC_Os07g36980
OsAffx.5555.1.S1_at--1140--8552Chr07:22139102..22139126 (25 bp)
TGGTTACTCAACAGGTTACTCAACA
LOC_Os07g36980
Target Sequence 
CGCATTGCTGGGACATTCGGTTACATNNCTCCTGANTACGTGATGTGCGGGCAGTACTCTACNAAATCAGACGTGTTCAG
NTTCGGCATTCTCGTAATAGAGATNGTGACNGGCCAAAGAAGGAACAGTGGGCCATATTTCTCTGAGCAAAATGGTGTAG
ATATATTGAGCATAGTATGGAGGCACTGGGAAGAGGGGACAACAGCAGAGATGATCGACCATTCCTTGGGAAGAAACTAC
AATGAGGCTGAGGTGGTAAAATGCATCAACATCGGACTCCTATGTGNCCAGCAAAACCCTGTAGATAGACCTACAATGGN
GGATGTCATGGTTTTGCTTAACAGCGACGCTACTTGCNCTCTNCCGGNTCCTGCACCTAGGCCAACATCTTNGATTGATG
GAAGCTCTGGTTACTCAACAGGTTACTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis