Browse Element(s) Details


Os.26903.1.S1_at

Description gb:AK111840.1
DB_XREF= gi:37988503
TID=Os.26903.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139I03, full insert sequence.
FL= gb:AK111865.1 gb:AK111840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3579011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed
LOC_Os07g35820NANA7+21446393..21446749hypothetical protein
LOC_Os07g35830NANA7+21450497..21451046NA
LOC_Os07g35840OsAffx.4053.1.S1_at1/117+21455609..21458589transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26903.1.S1_at--96--6831Chr07:21433537..21433561 (25 bp)
GTTTAGTTTTGGCATTCTCATCTTA
LOC_Os07g35790
Os.26903.1.S1_at--23--1111Chr07:21433488..21433512 (25 bp)
AGTGGGCCCTATTTTGCAGAGCAAA
LOC_Os07g35790
Os.26903.1.S1_at--650--6251Chr07:21433287..21433311 (25 bp)
GATGGTAGACTATTCCTTGGACAGA
LOC_Os07g35790
Os.26903.1.S1_at--175--5591Chr07:21433239..21433263 (25 bp)
GAAATGTGTCAACATCGGCCTCCTG
LOC_Os07g35790
Os.26903.1.S1_at--191--8711Chr07:21433212..21433236 (25 bp)
TGTCCAGCAGAACCCAGTAGATCGA
LOC_Os07g35790
Os.26903.1.S1_at--211--5552Chr07:21433102..21433126 (25 bp)
GAAACTGTTGCCAAATTTCACCGTT
LOC_Os07g35790
Os.26903.1.S1_at--526--6151Chr07:21433064..21433088 (25 bp)
GAGGTCAAACCCGTCTATTCAAAAG
LOC_Os07g35790
Os.26903.1.S1_at--14--9851Chr07:21433022..21433046 (25 bp)
TAAATGGGCTTCAATCCAGCTCACC
LOC_Os07g35790
Os.26903.1.S1_at--349--3391Chr07:21433006..21433030 (25 bp)
CAGCTCACCAACATTTGTAGGCCGG
LOC_Os07g35790
Os.26903.1.S1_at--891--6531Chr07:21432939..21432963 (25 bp)
GATTATGACCCATCCAATAGAGGTT
LOC_Os07g35790
Os.26903.1.S1_at--411--8171Chr07:21432867..21432891 (25 bp)
GGAACACAAAATGGGCTTATGGCGT
LOC_Os07g35790
Target Sequence 
GTTTAGTTTTGGCATTCTCATCTTAGAGATTGTGACAGGGCAAAGAAACAGTGGGCCCTATTTTGCAGAGCAAAACGAAG
ATTTAGTAAGCCTAGTATGGAGGCACTGGACAGAGGGAAATATTGTAGAGATGGTAGACTATTCCTTGGACAGAAACTAC
CCTGAAGCCGAGGTGCTGAAATGTGTCAACATCGGCCTCCTGTGTGTCCAGCAGAACCCAGTAGATCGACCTACAATGGC
GGATGTCATGATTTTGCTGTTAATTTATAGTCATGATTAGTTATAAACAAGGTGACACCAATGAGGTAAATCAAGAAACT
GTTGCCAAATTTCACCGTTAACAGAAACTCATGAGGTCAAACCCGTCTATTCAAAAGCTATTATTAGGCCTTGTTAAATG
GGCTTCAATCCAGCTCACCAACATTTGTAGGCCGGTAATTTGAANTAAAGTTCAATGCATGCACCAGAATCTGTCAAGAT
TATGACCCATCCAATAGAGGTTTAACATGATGGATTGAGNAATTATCCTCTGAAACAAGACCATCAATGGGAACACAAAA
TGGGCTTATGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis