Browse Element(s) Details


OsAffx.16573.1.S1_x_at

Description tigr:9635.m03534
TID=OsAffx.16573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3576011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16573.1.S1_x_at--1101--631Chr07:21420231..21420255 (25 bp)
ATGCATTCAAGTGCGATGCGCTCGC
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--821--3591Chr07:21420234..21420258 (25 bp)
CATTCAAGTGCGATGCGCTCGCGCA
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--82--5091Chr07:21420256..21420280 (25 bp)
GCACCCCACCTGATGGAGCCATGGA
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--696--4171Chr07:21420260..21420284 (25 bp)
CCCACCTGATGGAGCCATGGAGATC
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--588--8051Chr07:21420278..21420302 (25 bp)
GGAGATCGCCGAAGTCTGTGATGAC
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--685--4151Chr07:21420284..21420308 (25 bp)
CGCCGAAGTCTGTGATGACTGTGCT
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--690--6312Chr07:21420297..21420321 (25 bp)
GATGACTGTGCTTGTGCGCGTGCAA
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--1030--8691Chr07:21420309..21420333 (25 bp)
TGTGCGCGTGCAATGGAAGTTCACC
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--957--8191Chr07:21420323..21420347 (25 bp)
GGAAGTTCACCAGCAAGAGGAATAT
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--670--6172Chr07:21420362..21420386 (25 bp)
GAGGAGACCGTGTCGGCGACGGAGA
LOC_Os07g35760
OsAffx.16573.1.S1_x_at--1046--4571Chr07:21420403..21420427 (25 bp)
GCGCAGGAACGGGACCCTGTCGTTA
LOC_Os07g35760
Target Sequence 
ATGCATTCAAGTGCGATGCGCTCGCGCACCCCACCTGATGGAGCCATGGAGATCGCCGAAGTCTGTGATGACTGTGCTTG
TGCGCGTGCAATGGAAGTTCACCAGCAAGAGGAATATGTAGTGGCGGGGAGGAGGAGACCGTGTCGGCGACGGAGAGGGA
AAGGGAAGGCGTGCGCAGGAACGGGACCCTGTCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16573.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis