Browse Element(s) Details


OsAffx.5539.1.S1_x_at

Description tigr:9635.m03533
TID=OsAffx.5539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3575011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5539.1.S1_x_at--325--5272Chr02:25882737..25882761 (25 bp)
GAATCCAGCTGTTGTGCTGCAACAA
NONE
OsAffx.5539.1.S1_x_at--587--9352Chr02:25882811..25882835 (25 bp)
TCGAACCGAAGCCACCAGATGAGTT
NONE
OsAffx.5539.1.S1_x_at--859--712Chr02:25882840..25882864 (25 bp)
ATGATTACATGAGCCCTTTTACAGA
NONE
OsAffx.5539.1.S1_x_at--812--10472Chr02:25882858..25882882 (25 bp)
TTACAGATGGAAACCGCGCTAACAG
NONE
OsAffx.5539.1.S1_x_at--993--6772Chr02:25882955..25882979 (25 bp)
GTTAGTGCCATTGCTACCAGGTATA
NONE
OsAffx.5539.1.S1_x_at--390--8832Chr02:25883036..25883060 (25 bp)
TGATTCGTTGTGTTGTTGCTTGTTT
NONE
OsAffx.5539.1.S1_x_at--1057--3612Chr02:25883054..25883078 (25 bp)
CTTGTTTGTGGGAGCTCAGCATGCA
NONE
OsAffx.5539.1.S1_x_at--609--10471Chr07:21411151..21411175 (25 bp)
TTAATAGCTACCCTTCCAGTTCTTT
LOC_Os07g35750
OsAffx.5539.1.S1_x_at--1123--1172Chr02:25883106..25883130 (25 bp)
AGTTCTTTTCCTCTTATATTCCTTG
NONE
OsAffx.5539.1.S1_x_at--132--3012Chr02:25883202..25883226 (25 bp)
AATGACAGTTTTTGATCGAGCCATC
NONE
OsAffx.5539.1.S1_x_at--39--1332Chr02:25883253..25883277 (25 bp)
AGAGGACTCGACAACGCACGATGGA
NONE
Target Sequence 
GAATCCAGCTGTTGTGCTGCAACAATTTGTTTCATAGCAAAAGGGGAGGCTAAAATGCCTGCTAAAATGCTGCATCGAAC
CGAAGCCACCAGATGAGTTGGACATGATTACATGAGCCCTTTTACAGATGGAAACCGCGCTAACAGGGGAAATGGATTTG
ATGGATCTTTGTATCTGGACCAGGAAGAAACGTTTTCGTGGGTATGGATGAACAACTTGTTAGTGCCATTGCTACCAGGT
ATACATGTATCCTGTAGGATAGTAGTTGGACGTGGGTGTAGCTGCGTAGGCGAACAGATTGATTCGTTGTGTTGTTGCTT
GTTTGTGGGAGCTCAGCATGCAAGAAGATCCTTTAATAGCTACCCTTCCAGTTCTTTTCCTCTTATATTCCTTGAGAAGT
GGAAGAGGCTGTTGGTTTCGCAGAGGGAGAGACCGTGGGATGGTGGAACCATGGAAGATGAACCAAATGACAGTTTTTGA
TCGAGCCATCAAGGAGGAGGCGAATCGATGAGGGGAAGAGGACTCGACAACGCACGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5539.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis