Browse Element(s) Details

Os.50465.1.S1_x_at

Description

gb:AK121300.1
DB_XREF= gi:37990923
TID=Os.50465.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L17, full insert sequence.
FL= gb:AK121300.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g17590	11/11	HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os04g44320	1/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g17560	OsAffx.25123.1.S1_at	11/11	3	+	9736057..9738381	expressed protein
LOC_Os03g17570	Os.51433.1.S1_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S2_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S1_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580	Os.2244.1.S1_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17580	Os.2244.1.S1_s_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17590	Os.50465.1.S1_x_at	11/11	3	+	9762837..9767872	HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600	Os.29051.1.S1_at	10/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.1.S1_x_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.2.S1_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17610	Os.53537.1.S1_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610	OsAffx.12900.1.S1_x_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610	Os.52906.1.S1_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634	Os.52224.1.S1_at	11/11	3	+	9778147..9801118	pentatricopeptide, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50465.1.S1_x_at--1015--49	1	Chr03:9764369..9764393 (25 bp)	ATCGGTTCTCTACTATCTACATGGT	LOC_Os03g17590
Os.50465.1.S1_x_at--645--1083	1	Chr03:9763971..9763995 (25 bp)	TTGGTCACCTGTTCTTACAAGGACT	LOC_Os03g17590
Os.50465.1.S1_x_at--826--299	1	Chr03:9763925..9763949 (25 bp)	AATGATCCACAGTATCCTGCTGATT	LOC_Os03g17590
Os.50465.1.S1_x_at--719--611	1	Chr03:9763199..9763223 (25 bp)	GAGTGACACTTGTTCTGAGTATCCA	LOC_Os03g17590
Os.50465.1.S1_x_at--921--119	1	Chr03:9763182..9763206 (25 bp)	AGTATCCATGCTCCCTTCATTGTTA	LOC_Os03g17590
Os.50465.1.S1_x_at--311--499	2	Chr04:26029431..26029614 (25 bp)	GCATGCATTTTGTGCCACACCATTG	LOC_Os04g44320
Os.50465.1.S1_x_at--1069--803	1	Chr03:9763095..9763119 (25 bp)	GGAGTTCCATCTCTGATTCATTCCA	LOC_Os03g17590
Os.50465.1.S1_x_at--200--485	1	Chr03:9762979..9763003 (25 bp)	GAATCGTCAGGGTTTCAGGGCAGCA	LOC_Os03g17590
Os.50465.1.S1_x_at--1057--875	1	Chr03:9762921..9762945 (25 bp)	TGTACCAGACGTTCTTGTTTCCCTG	LOC_Os03g17590
Os.50465.1.S1_x_at--254--685	1	Chr03:9762905..9762929 (25 bp)	GTTTCCCTGCATCTTATTTCTTGGA	LOC_Os03g17590
Os.50465.1.S1_x_at--997--897	1	Chr03:9762852..9762876 (25 bp)	TGAACTATACACTTCCATTATCAAA	LOC_Os03g17590

Target Sequence

ATCGGTTCTCTACTATCTACATGGTTGGGGATAATCCTAAAGTTGATATAAATGGAGCTTNGAAGGCTGGACCCCCTTGG
TCACCTGTTCTTACAAGGACTGGCGTATTTAGGGGAAAGGATAATGATCCACAGTATCCTGCTGATTTGGTTGTTGATAC
TGTTGAGGATGCCATTAACTGTATTTTGGAAAAGGAATGTATACAGTGACAGAGTGACACTTGTTCTGAGTATCCATGCT
CCCTTCATTGTTATTTGGCATGCATTTTGTGCCACACCATTGNTTTGTCTAGCAATTCTGGAGCAATTGTTAGCCNGGAG
TTCCATCTCTGATTCATTCCACTTGNTTTAAGNTGGGACATCAGAAAATATGCTGATGCGCTATAGTATTTTTTTTTTCC
TGGCTGAGAGATANGCCGGACATTATATATGTAGAATCGTCAGGGTTTCAGGGCAGCANAGCTGCAGCAGAGCTNAAAGN
GAATTTCACCCTGTACCAGACGTTCTTGTTTCCCTGCATCTTATTTCTTGGATTTCAGTACTACCAATGACATTATTATA
TGAACTATACACTTCCATTATCAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis