Browse Element(s) Details


Os.8104.1.S2_a_at

Description gb:AK068603.1
DB_XREF= gi:32978620
TID=Os.8104.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157G11, full insert sequence.
FL= gb:AK068603.1 gb:AK099526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1757011/11Two-component response regulator-like PRR73, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580Os.2244.1.S1_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17580Os.2244.1.S1_s_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17590Os.50465.1.S1_x_at11/113+9762837..9767872HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600Os.29051.1.S1_at10/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.1.S1_x_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.2.S1_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007623biological_processcircadian rhythm
GO:0009266biological_processresponse to temperature stimulus
GO:0009640biological_processphotomorphogenesis
GO:0010017biological_processred or far red light signaling pathway
GO:0010031biological_processcircumnutation
GO:0016310biological_processphosphorylation
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8104.1.S2_a_at--892--3491Chr03:9739101..9739125 (25 bp)
CATGGCATCTGCTTTGACAGCTGGA
LOC_Os03g17570
Os.8104.1.S2_a_at--368--6011Chr03:9739078..9739102 (25 bp)
GAGAGCTACGCAATTCATTCCATAG
LOC_Os03g17570
Os.8104.1.S2_a_at--1120--6371Chr03:9739037..9739061 (25 bp)
GATCCCCACATTGGAGTGCTCAATA
LOC_Os03g17570
Os.8104.1.S2_a_at--198--731Chr03:9739000..9739024 (25 bp)
ATGATTATTTTCTGTGCCTGACTCC
LOC_Os03g17570
Os.8104.1.S2_a_at--1128--6111Chr03:9738956..9738980 (25 bp)
GAGTGGACCACGCATTTAATTTTAA
LOC_Os03g17570
Os.8104.1.S2_a_at--122--811Chr03:9738903..9738927 (25 bp)
ATGGTTATTTGTGACCTCCAGTTCC
LOC_Os03g17570
Os.8104.1.S2_a_at--1052--1211Chr03:9738884..9738908 (25 bp)
AGTTCCCTTGCAGAGATCCACTTGG
LOC_Os03g17570
Os.8104.1.S2_a_at--237--6371Chr03:9738870..9738894 (25 bp)
GATCCACTTGGACACTTTGTCGAGT
LOC_Os03g17570
Os.8104.1.S2_a_at--71--2651Chr03:9738832..9738856 (25 bp)
AACCATCTGACGTTTCTATCGGATC
LOC_Os03g17570
Os.8104.1.S2_a_at--795--6131Chr03:9738760..9738784 (25 bp)
GAGGGTTCAACTATTCATTGCGAGA
LOC_Os03g17570
Os.8104.1.S2_a_at--1105--10051Chr03:9738717..9738741 (25 bp)
TAGTACATACTTTTCTGCTGGCTGC
LOC_Os03g17570
Target Sequence 
CATGGCATCTGCTTTGACAGCTGGAGAGCTACGCAATTCATTCCATAGCTGAAAGCAGCTCATCGATCCCCACATTGGAG
TGCTCAATAAATAAAACCCATATGATTATTTTCTGTGCCTGACTCCAGATGAAATTTGTGCTATGGAGTGGACCACGCAT
TTAATTTTAATATGGCAATCGGTAACAACTTAGATGCGATGGTTATTTGTGACCTCCAGTTCCCTTGCAGAGATCCACTT
GGACACTTTGTCGAGTCTAAGGAGGAGCAAACCATCTGACGTTTCTATCGGATCATGAATGCTAAATCTTTACTCTACTA
CTACATCGAGCTGACATCAGTGAGGGTTCAACTATTCATTGCGAGACATTATTTTCAAGTCAAATAGTACATACTTTTCT
GCTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8104.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis