Browse Element(s) Details


OsAffx.25123.1.S1_at

Description tigr:9631.m01725
TID=OsAffx.25123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1756011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580Os.2244.1.S1_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17580Os.2244.1.S1_s_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17590Os.50465.1.S1_x_at11/113+9762837..9767872HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25123.1.S1_at--681--1691Chr03:9737556..9737580 (25 bp)
AGCCATCGACGCTAGCAGGACAGGA
LOC_Os03g17560
OsAffx.25123.1.S1_at--449--8051Chr03:9737578..9737602 (25 bp)
GGAGATAATACAGGCCGCTTTACTC
LOC_Os03g17560
OsAffx.25123.1.S1_at--1112--4511Chr03:9737591..9737615 (25 bp)
GCCGCTTTACTCTCATGATCGATGA
LOC_Os03g17560
OsAffx.25123.1.S1_at--1124--6611Chr03:9737661..9737685 (25 bp)
GTTGGACTTCTTGCATTATTGTGTT
LOC_Os03g17560
OsAffx.25123.1.S1_at--1110--8671Chr03:9737680..9737703 (24 bp)
TGTGTTACACTTACCTCTGAGATGA
LOC_Os03g17560
OsAffx.25123.1.S1_at--681--651Chr03:9737794..9737816 (23 bp)
ATGAATTGCTCGTTGGTCTTCCTTA
LOC_Os03g17560
OsAffx.25123.1.S1_at--213--6631Chr03:9737803..9737827 (25 bp)
GTTGGTCTTCCTTATTCATGAGGAT
LOC_Os03g17560
OsAffx.25123.1.S1_at--387--7711Chr03:9737853..9737877 (25 bp)
GGGTCCTTTTGCATCTGCGCTACAT
LOC_Os03g17560
OsAffx.25123.1.S1_at--998--9151Chr03:9737868..9737892 (25 bp)
TGCGCTACATTGCAGATCTTGTGAT
LOC_Os03g17560
OsAffx.25123.1.S1_at--333--6431Chr03:9737882..9737906 (25 bp)
GATCTTGTGATCAGAGCTGCACCTT
LOC_Os03g17560
OsAffx.25123.1.S1_at--481--9531Chr03:9738176..9738200 (25 bp)
TCTACCCTGGGAGCAGACATTAGCT
LOC_Os03g17560
Target Sequence 
AGCCATCGACGCTAGCAGGACAGGAGATAATACAGGCCGCTTTACTCTCATGATCGATGATGTTTCACTGTTAGAAGTTG
CAGCAGGTGGTTCTGTAGATGATGTGTTGGACTTCTTGCATTATTGTGTTACACTTACCTCTGAGATGAATTGCTCGTTG
GTCTTCCTTATTCATGAGGATATATATTCGAGTGAGGAAGGTGTGGGGGTCCTTTTGCATCTGCGCTACATTGCAGATCT
TGTGATCAGAGCTGCACCTTTGAGCACTGGTTTAGCTGCTGATGTTCATGGACAGCTTTCAGTGGTAAACAAGTGTACAT
TCAGGGAGCAAAGGCTAAAAGCACAGAGAATTTGGAACTTCCATTTTAGAGTGAAGGAAAACGGCGCTGACTTTTTCTAC
CCTGGGAGCAGACATTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis