Browse Element(s) Details


OsAffx.25122.1.S1_at

Description tigr:9631.m01722
TID=OsAffx.25122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1753011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25122.1.S1_at--707--8351Chr03:9718132..9718156 (25 bp)
GGCGGTGGTCCAAACTCAGCAGAGT
LOC_Os03g17530
OsAffx.25122.1.S1_at--578--5631Chr03:9718226..9718250 (25 bp)
GACACTCTCATGGAGCCGCTAGACG
LOC_Os03g17530
OsAffx.25122.1.S1_at--708--4131Chr03:9718242..9718266 (25 bp)
CGCTAGACGAGCCACCATTGTTGGT
LOC_Os03g17530
OsAffx.25122.1.S1_at--316--8511Chr03:9718323..9718347 (25 bp)
TGGCACTTGCCCACGTTGCGGACAA
LOC_Os03g17530
OsAffx.25122.1.S1_at--729--7691Chr03:9718404..9718428 (25 bp)
GGGTCATCGCGACGTCATTGAGCAA
LOC_Os03g17530
OsAffx.25122.1.S1_at--1030--1431Chr03:9718447..9718471 (25 bp)
AGAAGCTCCGGCTGAGGGCATCAAT
LOC_Os03g17530
OsAffx.25122.1.S1_at--523--371Chr03:9718466..9718490 (25 bp)
ATCAATGAGGCCTTTACGGTGCCGT
LOC_Os03g17530
OsAffx.25122.1.S1_at--609--6931Chr03:9718494..9718518 (25 bp)
GTAGGATGGGTTGCGGCCCCACCAA
LOC_Os03g17530
OsAffx.25122.1.S1_at--1068--3051Chr03:9718538..9718562 (25 bp)
AATCTCGTCGCTTCTTGTGCTTCGT
LOC_Os03g17530
OsAffx.25122.1.S1_at--127--10831Chr03:9718552..9718576 (25 bp)
TTGTGCTTCGTCATCTTTCTTGGTG
LOC_Os03g17530
OsAffx.25122.1.S1_at--960--3551Chr03:9718563..9718587 (25 bp)
CATCTTTCTTGGTGTGCTCTGGCAA
LOC_Os03g17530
Target Sequence 
GGCGGTGGTCCAAACTCAGCAGAGTGAGAAAGCGGATCAACCGAGGAAGGCGGCAGAGTGTGAGTCAACGGCACACTCCT
CGACAGCCAACCTCGACACTCTCATGGAGCCGCTAGACGAGCCACCATTGTTGGTGATTGAAGAGACCGAGTTCCCCCTC
CCACAACCTTCCATGGCGCTATCCCTCCCTATGGCACTTGCCCACGTTGCGGACAAGACCATGCGGCAGGGGCTTATCCC
CATGCCCGGCGACAGCGAGTGTCAGAGAGGAGGGGTCATCGCGACGTCATTGAGCAAGAAGCTGCAGCGGGAGGAAGAAG
CTCCGGCTGAGGGCATCAATGAGGCCTTTACGGTGCCGTGGTGTAGGATGGGTTGCGGCCCCACCAAGGAGAGGATGAGC
TCCTTCAATCTCGTCGCTTCTTGTGCTTCGTCATCTTTCTTGGTGTGCTCTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis