Browse Element(s) Details


Os.27671.1.S1_at

Description gb:AK065887.1
DB_XREF= gi:32975905
TID=Os.27671.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J05, full insert sequence.
FL= gb:AK065887.1 gb:AK061849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1747011/11IN2-1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17420OsAffx.31174.4.S1_x_at2/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17420OsAffx.31174.5.S1_x_at1/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17426NANA3+9674093..9674812hypothetical protein
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0005739cellular_componentmitochondrion
GO:0045174molecular_functionglutathione dehydrogenase (ascorbate) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27671.1.S1_at--707--2671Chr03:9692283..9692307 (25 bp)
AAGCTGCTCTGTCAAAGTTCAACGA
LOC_Os03g17470
Os.27671.1.S1_at--580--10871Chr03:9692130..9692268 (25 bp)
TTGGCCAGTTCAGCTTGGTGGACAT
LOC_Os03g17470
Os.27671.1.S1_at--528--8131Chr03:9692111..9692135 (25 bp)
GGACATTGCGTATGTTCCATTTATT
LOC_Os03g17470
Os.27671.1.S1_at--1129--9931Chr03:9692050..9692074 (25 bp)
TACGATATCACCAAGGGCCGACCCA
LOC_Os03g17470
Os.27671.1.S1_at--823--4511Chr03:9692034..9692058 (25 bp)
GCCGACCCAACCTTCAGAAATTCAT
LOC_Os03g17470
Os.27671.1.S1_at--396--5511Chr03:9691801..9691825 (25 bp)
GAACAAGATTCATGCCTATACAGAA
LOC_Os03g17470
Os.27671.1.S1_at--108--2131Chr03:9691771..9691795 (25 bp)
ACAGGACCCACAGTTTTTGCTTGAA
LOC_Os03g17470
Os.27671.1.S1_at--313--2731Chr03:9691617..9691764 (25 bp)
AAGAAGCGTCTTGGGATTGCCTGAA
LOC_Os03g17470
Os.27671.1.S1_at--558--7991Chr03:9691581..9691605 (25 bp)
GGATGAACCCACAACAACCTGCGAT
LOC_Os03g17470
Os.27671.1.S1_at--306--3531Chr03:9691466..9691490 (25 bp)
CATGCAGACCATGCTTATGGAACAA
LOC_Os03g17470
Os.27671.1.S1_at--359--10111Chr03:9691279..9691303 (25 bp)
TATGCTAAGCAGAAGTCAACCGGAC
LOC_Os03g17470
Target Sequence 
AAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCCAGTTCAGCTTGGTGGACATTGCGTATGTTCCATTT
ATTGAAAGGTTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCAACCTTCAGAAATTCAT
CGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTC
TTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGT
AGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATG
GAACAAACTATTATGTATTTTTGGTTTGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCT
TCGCGGGGCGTTGTCTAATAAATCAATGCTTCTTGTATCATTATTACTAGTTGTCAGGATGATTTTCATAGTGAAGTACT
TCTGCAAATATGCTAAGCAGAAGTCAACCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis