Browse Element(s) Details


OsAffx.12898.1.S1_at

Description tigr:9631.m01711
TID=OsAffx.12898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1743211/11pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17410OsAffx.12897.1.S1_at11/113+9659941..9664916expressed protein
LOC_Os03g17420OsAffx.31174.4.S1_x_at2/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17420OsAffx.31174.5.S1_x_at1/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17426NANA3+9674093..9674812hypothetical protein
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12898.1.S1_at--962--411Chr03:9678975..9678999 (25 bp)
ATCATGCTGATAAACTCGCCGGTGC
LOC_Os03g17432
OsAffx.12898.1.S1_at--682--2471Chr03:9679099..9679123 (25 bp)
AACAGCCGCCGGTGAGGATCTCAAA
LOC_Os03g17432
OsAffx.12898.1.S1_at--148--3771Chr03:9679185..9679209 (25 bp)
CTCTACCAGCCGGAGGAGTACGATG
LOC_Os03g17432
OsAffx.12898.1.S1_at--305--6091Chr03:9679200..9679224 (25 bp)
GAGTACGATGATCTCGACGAGCACA
LOC_Os03g17432
OsAffx.12898.1.S1_at--849--1731Chr03:9679224..9679248 (25 bp)
ACCATCCCACACATCAGGCAAGATG
LOC_Os03g17432
OsAffx.12898.1.S1_at--883--4812Chr03:9679268..9679292 (25 bp)
GCTCATGGTCAAGCGACATGCCGCT
LOC_Os03g17432
OsAffx.12898.1.S1_at--1062--6851Chr03:9679307..9679331 (25 bp)
GTTTGAGATTTTTGACCCGGCATTG
LOC_Os03g17432
OsAffx.12898.1.S1_at--790--10751Chr03:9679318..9679342 (25 bp)
TTGACCCGGCATTGGAACCGGCAGT
LOC_Os03g17432
OsAffx.12898.1.S1_at--359--1771Chr03:9679334..9679358 (25 bp)
ACCGGCAGTGCTGAAGAATGTCTTT
LOC_Os03g17432
OsAffx.12898.1.S1_at--447--10251Chr03:9679356..9679380 (25 bp)
TTTGGTCAGCTTGTCAACGGTGGCT
LOC_Os03g17432
OsAffx.12898.1.S1_at--914--3251Chr03:9679370..9679394 (25 bp)
CAACGGTGGCTACTTGGACAAGCTT
LOC_Os03g17432
Target Sequence 
ATCATGCTGATAAACTCGCCGGTGCCCGACGGCCGGAGGAGAGTCGTGCTGGCCACCGACGTGGCCGAGACGGCCGTGCT
GGTCCACGGGATCACGTACGTCGTCGACACCGGCCTGGTGTCGGAACAGCCGCCGGTGAGGATCTCAAAGGAGGCGGCGG
CCGCGCGGGCGGCGATCGCCGGATTCTCGGGGCCCGGCCGCTGCCACCGGCTCTACCAGCCGGAGGAGTACGATGATCTC
GACGAGCACACCATCCCACACATCAGGCAAGATGGCGCGGCCGTCAGGTTCGCGCTCATGGTCAAGCGACATGCCGCTGA
CGGCATCCCGGGGTTTGAGATTTTTGACCCGGCATTGGAACCGGCAGTGCTGAAGAATGTCTTTGGTCAGCTTGTCAACG
GTGGCTACTTGGACAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis