Browse Element(s) Details


Os.17031.1.S1_at

Description gb:AK101658.1
DB_XREF= gi:32986867
TID=Os.17031.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057I20, full insert sequence.
FL= gb:AK101658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1744011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17410OsAffx.12897.1.S1_at11/113+9659941..9664916expressed protein
LOC_Os03g17420OsAffx.31174.4.S1_x_at2/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17420OsAffx.31174.5.S1_x_at1/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17426NANA3+9674093..9674812hypothetical protein
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17031.1.S1_at--747--7631Chr03:9680328..9680352 (25 bp)
GGGAGCTGTGTTCTAGTGATTTCAA
LOC_Os03g17440
Os.17031.1.S1_at--1002--7991Chr03:9680279..9680303 (25 bp)
GGAGGGCCAGTTCAATGCTACTTTC
LOC_Os03g17440
Os.17031.1.S1_at--838--611Chr03:9680265..9680289 (25 bp)
ATGCTACTTTCCTATGCCCAAATTG
LOC_Os03g17440
Os.17031.1.S1_at--167--2251Chr03:9680249..9680270 (22 bp)
AAATTGCACTGCCTCTGCGGGTGAT
LOC_Os03g17440
Os.17031.1.S1_at--767--6571Chr03:9680010..9680034 (25 bp)
GATTCTGCAAACCATGATTCTAGCT
LOC_Os03g17440
Os.17031.1.S1_at--599--2431Chr03:9679970..9679994 (25 bp)
AAAAGTCATCCGTTACTGTAATCAT
LOC_Os03g17440
Os.17031.1.S1_at--461--10471Chr03:9679854..9679878 (25 bp)
TTACGATTCCTCAAACTCTTCGAAG
LOC_Os03g17440
Os.17031.1.S1_at--740--1211Chr03:9679771..9679795 (25 bp)
AGTTAGGTTCCTGAAGCTCTGTGGA
LOC_Os03g17440
Os.17031.1.S1_at--446--2091Chr03:9679694..9679718 (25 bp)
ACATCACGTACAGTCTGACCTGGGA
LOC_Os03g17440
Os.17031.1.S1_at--399--5831Chr03:9679678..9679702 (25 bp)
GACCTGGGACCTTTTCAGATGGATT
LOC_Os03g17440
Os.17031.1.S1_at--196--6251Chr03:9679661..9679685 (25 bp)
GATGGATTCTCCATGTCATGTATAA
LOC_Os03g17440
Target Sequence 
GGGAGCTGTGTTCTAGTGATTTCAAAAAAGGAAAATACACCCATTTCAAGGAGGGCCAGTTCAATGCTACTTTCCTATGC
CCAAATTGCACTGCCTCTGCGGGTGATTCTGCAAACCATGATTCTAGCTCAGAAGTGGAAACTAAAAAGTCATCCGTTAC
TGTAATCATAATAGTCAGTGNTTCTTTCNTTCTNGTCCTTGTTATCATTGCNATTATTTGGGGGCTACAAGNTACTGGCN
TGAAGNAAGAAGAGGGAGCGGGATCANGTTACGATTCCTCAAACTCTTCGAAGAGGGAGACGACATTGAAGACGAACTGG
NCCTTGGCAATGAACTCTGAACAGCACNATATAGTTAGGTTCCTGAAGCTCTGTGGAGAGGGAGGTGACACTGAAGATGA
GCTGCCCCTGNCAAGGAACTCTTTCCNAAACATCACGTACAGTCTGACCTGGGACCTTTTCAGATGGATTCTCCATGTCA
TGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis