Browse Element(s) Details


Os.23533.1.S1_at

Description gb:AK105569.1
DB_XREF= gi:32990778
TID=Os.23533.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C11, full insert sequence.
FL= gb:AK105569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1755011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23533.1.S1_at--364--8251Chr03:9731269..9731293 (25 bp)
GGCAGCTAGGAAGCCCAATTGCAGA
LOC_Os03g17550
Os.23533.1.S1_at--980--2491Chr03:9731239..9731263 (25 bp)
AACATGGTTTCCCTGTCACTATTAG
LOC_Os03g17550
Os.23533.1.S1_at--1022--7091Chr03:9731225..9731249 (25 bp)
GTCACTATTAGTCTCAAGCCTTGCT
LOC_Os03g17550
Os.23533.1.S1_at--416--3251Chr03:9731211..9731235 (25 bp)
CAAGCCTTGCTCTTTGTGTCGTGAG
LOC_Os03g17550
Os.23533.1.S1_at--514--5871Chr03:9731189..9731213 (25 bp)
GAGCCGTGATGGTTACTGCCTGAGA
LOC_Os03g17550
Os.23533.1.S1_at--1131--2151Chr03:9731147..9731171 (25 bp)
ACAGCGCTGTTCCATTTCGGAACAT
LOC_Os03g17550
Os.23533.1.S1_at--1052--9351Chr03:9731048..9731072 (25 bp)
TCGACATAGAGCTCCATACTCCGAA
LOC_Os03g17550
Os.23533.1.S1_at--358--331Chr03:9731033..9731057 (25 bp)
ATACTCCGAAAGCATCTCCAGATGG
LOC_Os03g17550
Os.23533.1.S1_at--1095--811Chr03:9731012..9731036 (25 bp)
ATGGTTTCATGGCATTGCTCCTATG
LOC_Os03g17550
Os.23533.1.S1_at--422--8291Chr03:9731002..9731026 (25 bp)
GGCATTGCTCCTATGTTGAAATCAG
LOC_Os03g17550
Os.23533.1.S1_at--681--1891Chr03:9730962..9730986 (25 bp)
ACGTTTGCTTCCCTTTGTTGTATGG
LOC_Os03g17550
Target Sequence 
GGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGT
GAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGNACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTC
TGGAGGGAACTTCTGTTCCTTTTNTTCTGTACATGGATGAGGCTTGTCATTTTGTNGTCTTTCGACATAGAGCTCCATAC
TCCGAAAGCATCTCCAGATGGTTTCATGGCATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCC
TTTGTTGTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis