Browse Element(s) Details


Os.2244.1.S1_at

Description gb:AF095709.1
DB_XREF= gi:3777601
GEN=rpl10
TID=Os.2244.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2244 (NCBI UniGene Cluster)
DEF=Oryza sativa clone LS195 50S ribosomal protein L10 (rpl10) mRNA, nuclear gene encoding chloroplast protein, complete cds.
PROD=50S ribosomal protein L10
FL= gb:AK069064.1 gb:AF095709.1 gb:AK061592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1758011/11ribosomal protein L10 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580Os.2244.1.S1_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17580Os.2244.1.S1_s_at11/113+9760485..9761575ribosomal protein L10 containing protein, expressed
LOC_Os03g17590Os.50465.1.S1_x_at11/113+9762837..9767872HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600Os.29051.1.S1_at10/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.1.S1_x_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600Os.15770.2.S1_at1/113+9767924..9770898UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17610Os.53537.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610OsAffx.12900.1.S1_x_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610Os.52906.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2244.1.S1_at--923--8391Chr03:9760872..9760896 (25 bp)
GGCGCCGCCTGATGGCTGTTGAGAG
LOC_Os03g17580
Os.2244.1.S1_at--363--3871Chr03:9760857..9760881 (25 bp)
CTGTTGAGAGATGGTTTTGTGGCTT
LOC_Os03g17580
Os.2244.1.S1_at--1051--6831Chr03:9760831..9760855 (25 bp)
GTTTCTCTCATCTCACTCATTTCTT
LOC_Os03g17580
Os.2244.1.S1_at--263--3772Chr04:31585805..31586243 (25 bp)
CTCTCATCTCACTCATTTCTTGTAG
NONE
Os.2244.1.S1_at--52--3331Chr03:9760818..9760842 (25 bp)
CACTCATTTCTTGTAGAATTCCTGT
LOC_Os03g17580
Os.2244.1.S1_at--758--1471Chr03:9760804..9760828 (25 bp)
AGAATTCCTGTACTTTTACTGCCTC
LOC_Os03g17580
Os.2244.1.S1_at--647--8751Chr03:9760796..9760820 (25 bp)
TGTACTTTTACTGCCTCACGTTTGA
LOC_Os03g17580
Os.2244.1.S1_at--686--9891Chr03:9760794..9760818 (25 bp)
TACTTTTACTGCCTCACGTTTGAAT
LOC_Os03g17580
Os.2244.1.S1_at--848--10331Chr03:9760790..9760814 (25 bp)
TTTACTGCCTCACGTTTGAATTGAA
LOC_Os03g17580
Os.2244.1.S1_at--424--4451Chr03:9760784..9760808 (25 bp)
GCCTCACGTTTGAATTGAATCACAA
LOC_Os03g17580
Os.2244.1.S1_at--16--9011Chr03:9760769..9760793 (25 bp)
TGAATCACAAAAGTTTTACCTCTTA
LOC_Os03g17580
Target Sequence 
GGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTA
CTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis