Browse Element(s) Details

Os.29051.1.S1_at

Description

gb:AK110712.1
DB_XREF= gi:32995921
TID=Os.29051.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D02, full insert sequence.
FL= gb:AK110712.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g17600	10/11	UPF0308 protein, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g17570	Os.51433.1.S1_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S2_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S1_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580	Os.2244.1.S1_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17580	Os.2244.1.S1_s_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17590	Os.50465.1.S1_x_at	11/11	3	+	9762837..9767872	HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600	Os.29051.1.S1_at	10/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.1.S1_x_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.2.S1_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17610	Os.53537.1.S1_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610	OsAffx.12900.1.S1_x_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610	Os.52906.1.S1_at	11/11	3	+	9773392..9778171	DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634	Os.52224.1.S1_at	11/11	3	+	9778147..9801118	pentatricopeptide, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.29051.1.S1_at--198--17	1	Chr03:9768394..9768510 (25 bp)	ATTTTGGATGCGTGCTGTGCCGTAA	LOC_Os03g17600
Os.29051.1.S1_at--336--957	1	Chr03:9768520..9768613 (25 bp)	TCTTCTCGCGGCTAAGCAGGATGCA	LOC_Os03g17600
Os.29051.1.S1_at--758--689	1	Chr03:9770215..9770239 (25 bp)	GTATACGCTGATCCAAGTCACTCAT	LOC_Os03g17600
Os.29051.1.S1_at--632--709	1	Chr03:9770231..9770255 (25 bp)	GTCACTCATCATATAATGCCCTTGA	LOC_Os03g17600
Os.29051.1.S1_at--321--523	1	Chr03:9770254..9770278 (25 bp)	GAATTTGCATTTGGGCTGTTCTCAA	LOC_Os03g17600
Os.29051.1.S1_at--482--879	1	Chr03:9770270..9770293 (24 bp)	TGTTCTCAACGTTTACTCCATCGGC	LOC_Os03g17600
Os.29051.1.S1_at--933--381	1	Chr03:9770285..9770386 (25 bp)	CTCCATCGGCCGGTTTGAAGATTAT	LOC_Os03g17600
Os.29051.1.S1_at--473--387	1	Chr03:9770424..9770448 (25 bp)	CTGTCGTTCGAGAAGACCACCAGAA	LOC_Os03g17600
Os.29051.1.S1_at--558--501	1	NONE	GCAGGACTAGGCATCGACAATATTT	NONE
Os.29051.1.S1_at--869--233	1	Chr03:9770796..9770820 (25 bp)	AAAGCTTGCTGTTCCTAGATCACTA	LOC_Os03g17600
Os.29051.1.S1_at--209--43	1	Chr03:9770830..9770854 (25 bp)	ATCATTTCTGTTAACCTCCAGACCT	LOC_Os03g17600

Target Sequence

ATTTTGGATGCGTGCTGTGCCGTAAGAGGGCCGATCTTCTCGCGGCTAAGCAGGATGCAATGGAGGCTGCAGGGGTTGCT
CTTGTTTTAATCGGACCAGGTACTGTTGAACAGGCAAAGGCATTTTATGACCAAACCAAATTCAAAGGAGAAGTATACGC
TGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCATTTGGGCTGTTCTCAACGTTTACTCCATCGGCCGGTTTGA
AGATTATACAGTTGTACATGGAAGGATACAGGCAGGATTGGGAACTGTCGTTCGAGAAGACCACCAGAACGAAAGGTGGA
TGGTATCAAGGGGGCCTACTTGTTGCAGGACTAGGCATCGACAATATTTTGTATATCCACAAGGACAAAGAAGCAGGAGA
TGACCCTGACATGGATGATGTCTTGAAAGCTTGCTGTTCCTAGATCACTAGTATCCTATATCATTTCTGTTAACCTCCAG
ACCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis