Browse Element(s) Details


Os.15015.1.S1_a_at

Description gb:AK063813.1
DB_XREF= gi:32973831
TID=Os.15015.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H01, full insert sequence.
FL= gb:AK103676.1 gb:AK063813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3796011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g37970OsAffx.29578.1.S1_at11/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37970Os.57514.1.S1_x_at1/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15015.1.S1_a_at--78--4551Chr08:23908016..23908040 (25 bp)
GCCCTGCTCGCAATGGAAGTCCTGA
LOC_Os08g37960
Os.15015.1.S1_a_at--132--471Chr08:23907980..23908004 (25 bp)
ATGGAAAAGGTTCACCTCCTTCACG
LOC_Os08g37960
Os.15015.1.S1_a_at--362--4791Chr08:23907926..23907950 (25 bp)
GCTCCCGTAGCCCAGGTAGTGATGA
LOC_Os08g37960
Os.15015.1.S1_a_at--818--2831Chr08:23907795..23907819 (25 bp)
AAGTTTGTTGATCCAGTGATGCTTA
LOC_Os08g37960
Os.15015.1.S1_a_at--458--7651Chr08:23907728..23907752 (25 bp)
GGGAGTAGCACCGAAGCAGATTCAA
LOC_Os08g37960
Os.15015.1.S1_a_at--34--3991Chr08:23907689..23907713 (25 bp)
CGTGGTTTCTAGATTGTATTTCCTG
LOC_Os08g37960
Os.15015.1.S1_a_at--2--10431Chr08:23907563..23907587 (25 bp)
TTATCTGTTCGTGAGACGGGTTGCT
LOC_Os08g37960
Os.15015.1.S1_a_at--55--5751Chr08:23907549..23907573 (25 bp)
GACGGGTTGCTGTTTTCTAGTAGAA
LOC_Os08g37960
Os.15015.1.S1_a_at--1143--5271Chr08:23907527..23907551 (25 bp)
GAATGATATTGCACGGGATCGCCCA
LOC_Os08g37960
Os.15015.1.S1_a_at--200--611Chr08:23907460..23907484 (25 bp)
ATGCCCGCGATGGTGCAGCTGATGA
LOC_Os08g37960
Os.15015.1.S1_a_at--879--7591Chr08:23907407..23907431 (25 bp)
GGGCAGATCTTGGTATTGACACACT
LOC_Os08g37960
Target Sequence 
GCCCTGCTCGCAATGGAAGTCCTGAAAAAGAGACAAATGGAAAAGGTTCACCTCCTTCACGCAGTGTTTCACCATCACCA
CAGCGTGCTGGCTCCCGTAGCCCAGGTAGTGATGACAAGGAATAAAGTTTGTTGATCCAGTGATGCTTAAGAAGAGTCTT
CAAATTGGACTAGAAAAGTTTGGCTGAGCATGGGAGTAGCACCGAAGCAGATTCAAGGTTGCTAGTTCTTCGTGGTTTCT
AGATTGTATTTCCTGGTACTGTCAGAATTATGTTGTCGGTTTGTATTTTCACCTCTATTGTGCCTTATTTTGATACTGTC
GTATTAACTTGTGTTAAAACATTTGTCATTTTCTAGTTATCTGTTCGTGAGACGGGTTGCTGTTTTCTAGTAGAATGATA
TTGCACGGGATCGCCCATGATGGATGATGTTCTAGCTATTAGTCTTTGTTGTTGGTGTGATGCCCGCGATGGTGCAGCTG
ATGATTGTGGTGATGGCGCTGATGCTGATTATGGGCAGATCTTGGTATTGACACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15015.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis