Browse Element(s) Details


OsAffx.29578.1.S1_at

Description tigr:9636.m03818
TID=OsAffx.29578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3797011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g37970OsAffx.29578.1.S1_at11/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37970Os.57514.1.S1_x_at1/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37990OsAffx.29580.1.S1_at11/118+23940848..23941731expressed protein
LOC_Os08g38000NANA8+23943630..23943914hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29578.1.S1_at--856--5032Chr04:11243431..11243455 (25 bp)
GCAGATCATGCAGGGCGCCGGTGGT
NONE
OsAffx.29578.1.S1_at--797--4011Chr08:23919208..23919232 (25 bp)
CGTCGTCGCCTGCAGGCAGCTCTGT
LOC_Os08g37970
OsAffx.29578.1.S1_at--674--9051Chr08:23919198..23919222 (25 bp)
TGCAGGCAGCTCTGTCCCGATCACG
LOC_Os08g37970
OsAffx.29578.1.S1_at--1134--5611Chr08:23919132..23919156 (25 bp)
GACACCGTGCGCGTTTTCCGAGGCT
LOC_Os08g37970
OsAffx.29578.1.S1_at--289--10391Chr08:23919119..23919143 (25 bp)
TTTTCCGAGGCTCCGGTGATCACGA
LOC_Os08g37970
OsAffx.29578.1.S1_at--871--911Chr08:23919112..23919136 (25 bp)
AGGCTCCGGTGATCACGAGCGACGA
LOC_Os08g37970
OsAffx.29578.1.S1_at--354--6231Chr08:23919083..23919107 (25 bp)
GAGGCCAACCTGAGGCTCCTCGGCT
LOC_Os08g37970
OsAffx.29578.1.S1_at--294--5791Chr08:23919041..23919065 (25 bp)
GACGCGTTCACGTGCCACGGTGGCT
LOC_Os08g37970
OsAffx.29578.1.S1_at--867--1851Chr08:23918978..23919002 (25 bp)
ACGACGATGACGAACCCGTTGGACT
LOC_Os08g37970
OsAffx.29578.1.S1_at--652--671Chr08:23918972..23918996 (25 bp)
ATGACGAACCCGTTGGACTGGTGCA
LOC_Os08g37970
OsAffx.29578.1.S1_at--963--2611Chr08:23918966..23918990 (25 bp)
AACCCGTTGGACTGGTGCAGCGCGA
LOC_Os08g37970
Target Sequence 
GCAGATCATGCAGGGCGCCGGTGGTGGTGGTGGCGCCGACGTTGCCATCCAGGCCGCCAAGATGCAGTACCTGCAGTGCC
TCCTCCAGTCCGCCGCCTCCACCATCGCCTCGGCCGGCTCCGGCGGCGGCGGCGGCGGCGCCATGTCCGCGCACGACGCC
GACGCGGCTCTCGCCGCCGCCGCCGCCGCCGCGGCCACCTGCTCGTCGTCGCCTGCAGGCAGCTCTGTCCCGATCACGCC
GACGGCCGTAGGCCATTCCGGCGGCGGCCAGACCCAGACGACACCGTGCGCGTTTTCCGAGGCTCCGGTGATCACGAGCG
ACGACGTCGAGGCCAACCTGAGGCTCCTCGGCTGCGGCGCCGGCGGCGCCGACGCGTTCACGTGCCACGGTGGCTCTCTG
CCGCCGCTCGCCGATCTCTCCGACGTGACGACGACGACGATGACGAACCCGTTGGACTGGTGCAGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis